Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7ARB
DownloadVisualize
BU of 7arb by Molmil
Cryo-EM structure of Arabidopsis thaliana Complex-I (complete composition)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE, ...
Authors:Klusch, N, Kuelbrandt, W, Yildiz, O.
Deposit date:2020-10-23
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:A ferredoxin bridge connects the two arms of plant mitochondrial complex I.
Plant Cell, 33, 2021
7AR7
DownloadVisualize
BU of 7ar7 by Molmil
Cryo-EM structure of Arabidopsis thaliana complex-I (open conformation)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE, ...
Authors:Klusch, N, Kuelbrandt, W.
Deposit date:2020-10-23
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:A ferredoxin bridge connects the two arms of plant mitochondrial complex I.
Plant Cell, 33, 2021
8GLH
DownloadVisualize
BU of 8glh by Molmil
Crystal Structure of Human CD1b in Complex with Endogenous PC C40:5
Descriptor: (11E)-hexadec-11-enoic acid, 1,2-ETHANEDIOL, Beta-2-microglobulin, ...
Authors:Farquhar, R, Rossjohn, J, Shahine, A.
Deposit date:2023-03-22
Release date:2023-09-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms.
Cell, 186, 2023
8I42
DownloadVisualize
BU of 8i42 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 7.5
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I47
DownloadVisualize
BU of 8i47 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 5.5
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
2BU3
DownloadVisualize
BU of 2bu3 by Molmil
Acyl-enzyme intermediate between Alr0975 and glutathione at pH 3.4
Descriptor: ALR0975 PROTEIN, CALCIUM ION, CHLORIDE ION, ...
Authors:Vivares, D, Arnoux, P, Pignol, D.
Deposit date:2005-06-08
Release date:2005-12-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Papain-Like Enzyme at Work: Native and Acyl- Enzyme Intermediate Structures in Phytochelatin Synthesis.
Proc.Natl.Acad.Sci.USA, 102, 2005
2BTW
DownloadVisualize
BU of 2btw by Molmil
Crystal structure of Alr0975
Descriptor: ALR0975 PROTEIN, CALCIUM ION
Authors:Vivares, D, Arnoux, P, Pignol, D.
Deposit date:2005-06-07
Release date:2005-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Papain-Like Enzyme at Work: Native and Acyl- Enzyme Intermediate Structures in Phytochelatin Synthesis.
Proc.Natl.Acad.Sci.USA, 102, 2005
2K0J
DownloadVisualize
BU of 2k0j by Molmil
Solution structure of CaM complexed to DRP1p
Descriptor: CALCIUM ION, LANTHANUM (III) ION, calmodulin
Authors:Bertini, I, Luchinat, C, Parigi, G, Yuan, J, Structural Proteomics in Europe (SPINE)
Deposit date:2008-02-04
Release date:2009-03-10
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples.
J.Am.Chem.Soc., 131, 2009
2M66
DownloadVisualize
BU of 2m66 by Molmil
Endoplasmic reticulum protein 29 (ERp29) C-terminal domain: 3D Protein Fold Determination from Backbone Amide Pseudocontact Shifts Generated by Lanthanide Tags at Multiple Sites
Descriptor: Endoplasmic reticulum resident protein 29
Authors:Yagi, H, Pilla, K, Maleckis, A, Graham, B, Huber, T, Otting, G.
Deposit date:2013-03-26
Release date:2013-07-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Three-dimensional protein fold determination from backbone amide pseudocontact shifts generated by lanthanide tags at multiple sites
Structure, 21, 2013
2XY8
DownloadVisualize
BU of 2xy8 by Molmil
Paramagnetic-based NMR structure of the complex between the N- terminal epsilon domain and the theta domain of the DNA polymerase III
Descriptor: CALCIUM ION, DNA POLYMERASE III SUBUNIT EPSILON, DNA POLYMERASE III SUBUNIT THETA
Authors:Schmitz, C, Bonvin, A.M.J.J.
Deposit date:2010-11-16
Release date:2011-06-29
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:Protein-Protein Haddocking Using Exclusively Pseudocontact Shifts.
J.Biomol.NMR, 50, 2011
7KLD
DownloadVisualize
BU of 7kld by Molmil
Crystal Structure of an Essential Ribosomal Processing Protease Prp from S. aureus in complex with a covalently linked product Peptide
Descriptor: CALCIUM ION, LYS-LEU-ASN-LEU-GLN-PHE-PCS, Phage-related ribosomal protease
Authors:Wright, H.T, Peterson, D.
Deposit date:2020-10-29
Release date:2021-09-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Phage-Related Ribosomal Protease (Prp) of Staphylococcus aureus : In Vitro Michaelis-Menten Kinetics, Screening for Inhibitors, and Crystal Structure of a Covalent Inhibition Product Complex.
Biochemistry, 61, 2022
5T1N
DownloadVisualize
BU of 5t1n by Molmil
Solution-state NMR structural ensemble of NPr (1-85) refined with RDCs and PCS
Descriptor: Phosphocarrier protein NPr
Authors:Strickland, M, Wang, G, Peterkofsky, A, Tjandra, N.
Deposit date:2016-08-19
Release date:2016-11-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the NPr:EIN(Ntr) Complex: Mechanism for Specificity in Paralogous Phosphotransferase Systems.
Structure, 24, 2016
8OH7
DownloadVisualize
BU of 8oh7 by Molmil
Structure of A4M4C bound to (KR)4 Solution backbone structure refined by PCS
Descriptor: Designed Armadillo repeat protein with four internal modules
Authors:Cucuzza, S, Zerbe, O.
Deposit date:2023-03-20
Release date:2023-12-13
Method:SOLUTION NMR
Cite:Unexpected dynamics in femtomolar complexes of binding proteins with peptides.
Nat Commun, 14, 2023
7QB3
DownloadVisualize
BU of 7qb3 by Molmil
Solution structure of a lanthanide-binding DNA aptamer
Descriptor: LUTETIUM (III) ION, Lanthanide-binding aptamer
Authors:Andralojc, W, Gdaniec, Z.
Deposit date:2021-11-18
Release date:2021-12-01
Last modified:2022-12-21
Method:SOLUTION NMR
Cite:Solution Structure of a Lanthanide-binding DNA Aptamer Determined Using High Quality pseudocontact shift restraints.
Chemistry, 28, 2022
4F0U
DownloadVisualize
BU of 4f0u by Molmil
X-Ray Crystal Structure of Allophycocyanin from Synechococcus elongatus PCC 7942
Descriptor: Allophycocyanin alpha chain, Allophycocyanin, beta subunit, ...
Authors:Marx, A, Adir, N.
Deposit date:2012-05-05
Release date:2013-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Allophycocyanin and phycocyanin crystal structures reveal facets of phycobilisome assembly.
Biochim.Biophys.Acta, 1827, 2013
7BHO
DownloadVisualize
BU of 7bho by Molmil
DNA origami signpost designed model
Descriptor: DNA, DNA scaffold
Authors:Silvester, E, Vollmer, B, Prazak, V, Vasishtan, D, Machala, E.A, Whittle, C, Black, S, Bath, J, Turberfield, A.J, Gruenewald, K, Baker, L.A.
Deposit date:2021-01-11
Release date:2021-04-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (36.439999 Å)
Cite:DNA origami signposts for identifying proteins on cell membranes by electron cryotomography.
Cell, 184, 2021
3TW6
DownloadVisualize
BU of 3tw6 by Molmil
Structure of Rhizobium etli pyruvate carboxylase T882A with the allosteric activator, acetyl coenzyme-A
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:St Maurice, M, Kumar, S, Lietzan, A.D.
Deposit date:2011-09-21
Release date:2011-10-19
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli.
Biochemistry, 50, 2011
3TW7
DownloadVisualize
BU of 3tw7 by Molmil
Structure of Rhizobium etli pyruvate carboxylase T882A crystallized without acetyl coenzyme-A
Descriptor: CHLORIDE ION, MAGNESIUM ION, Pyruvate carboxylase protein, ...
Authors:St Maurice, M, Kumar, S, Lietzan, A.D.
Deposit date:2011-09-21
Release date:2011-10-12
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli.
Biochemistry, 50, 2011
1B3I
DownloadVisualize
BU of 1b3i by Molmil
NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (MINIMIZED AVERAGE STRUCTURE)
Descriptor: COPPER (I) ION, PROTEIN (PLASTOCYANIN)
Authors:Babu, C.R, Volkman, B.F, Bullerjahn, G.S.
Deposit date:1998-12-11
Release date:1999-04-27
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR solution structure of plastocyanin from the photosynthetic prokaryote, Prochlorothrix hollandica.
Biochemistry, 38, 1999
1ULZ
DownloadVisualize
BU of 1ulz by Molmil
Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase
Descriptor: pyruvate carboxylase n-terminal domain
Authors:Kondo, S, Nakajima, Y, Sugio, S, Yong-Biao, J, Sueda, S, Kondo, H.
Deposit date:2003-09-18
Release date:2004-03-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
2JXM
DownloadVisualize
BU of 2jxm by Molmil
Ensemble of twenty structures of the Prochlorothrix hollandica plastocyanin- cytochrome f complex
Descriptor: COPPER (II) ION, Cytochrome f, HEME C, ...
Authors:Hulsker, R, Baranova, M, Bullerjahn, G, Ubbink, M.
Deposit date:2007-11-22
Release date:2008-02-12
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica.
J.Am.Chem.Soc., 130, 2008
5TOU
DownloadVisualize
BU of 5tou by Molmil
STRUCTURE OF C-PHYCOCYANIN FROM ARCTIC PSEUDANABAENA SP. LW0831
Descriptor: PHYCOCYANOBILIN, Phycocyanin alpha-1 subunit, Phycocyanin beta-1 subunit
Authors:Wang, Q.M, Li, C.Y, Su, H.N, Zhang, Y.Z, Xie, B.B.
Deposit date:2016-10-18
Release date:2017-03-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural insights into the cold adaptation of the photosynthetic pigment-protein C-phycocyanin from an Arctic cyanobacterium
Biochim. Biophys. Acta, 1858, 2017
1F99
DownloadVisualize
BU of 1f99 by Molmil
CRYSTAL STRUCTURE OF R-PHYCOCYANIN FROM POLYSIPHONIA AT 2.4 A RESOLUTION
Descriptor: BILIVERDINE IX ALPHA, PHYCOCYANOBILIN, PHYCOERYTHROBILIN, ...
Authors:Liang, D.C, Jiang, T, Chang, W.R.
Deposit date:2000-07-09
Release date:2001-07-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of R-phycocyanin and possible energy transfer pathways in the phycobilisome.
Biophys.J., 81, 2001
2F5K
DownloadVisualize
BU of 2f5k by Molmil
Crystal structure of the chromo domain of human MRG15
Descriptor: Mortality factor 4-like protein 1
Authors:Zhang, P, Du, J, Ding, J.
Deposit date:2005-11-26
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3.
Nucleic Acids Res., 34, 2006
3NPH
DownloadVisualize
BU of 3nph by Molmil
Crystal structure of the pfam00427 domain from Synechocystis sp. PCC 6803
Descriptor: Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2
Authors:Gao, X, Chen, L, Wu, J.-W, Zhang, Y.-Z.
Deposit date:2010-06-28
Release date:2011-06-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Crystal structure of the N-terminal domain of linker L(R) and the assembly of cyanobacterial phycobilisome rods
Mol.Microbiol., 82, 2011

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon