PDB: 196 件ウェブページステータス検索Chemie searchBIRD

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4Z58	HipB-O3 20mer complex 分子名称: Antitoxin HipB, DNA (5'-D(*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*TP*AP*CP*GP*GP*GP*AP*TP*AP*A)-3') 著者 Min, J, Brennan, R.G, Schumacher, M.A. 登録日 2015-04-02 公開日 2016-07-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Molecular mechanism on hipBA gene regulation. To be published
3UFD	C.Esp1396I bound to its highest affinity operator site OM 分子名称: CHLORIDE ION, DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'), ... 著者 Ball, N.J, McGeehan, J.E, Streeter, S.D, Thresh, S.-J, Kneale, G.G. 登録日 2011-11-01 公開日 2012-07-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The structural basis of differential DNA sequence recognition by restriction-modification controller proteins. Nucleic Acids Res., 40, 2012
3VK0	Crystal Structure of hypothetical transcription factor NHTF from Neisseria 分子名称: Transcriptional regulator 著者 Wang, H.-C, Ko, T.-P, Wu, M.-L, Wu, H.-J, Ku, S.-C, Wang, A.H.-J. 登録日 2011-11-01 公開日 2012-03-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor Nucleic Acids Res., 2012
2PPX	Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens 分子名称: GLYCEROL, SULFATE ION, Uncharacterized protein Atu1735 著者 Cuff, M.E, Skarina, T, Onopriyenko, O, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2007-04-30 公開日 2007-05-29 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a HTH XRE-family like protein from Agrobacterium tumefaciens. TO BE PUBLISHED
5A7L	TP901-1 CI NTD (res 1-80) 分子名称: CI 著者 Frandsen, K.E.H, Rasmussen, K.K, Lo Leggio, L. 登録日 2015-07-08 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.103 Å) 主引用文献 Structural and Dynamics Studies of a Truncated Variant of Ci Repressor from Bacteriophage Tp901-1. Sci.Rep., 6, 2016
2R1J	Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T 分子名称: 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3', Repressor protein C2 著者 Williams, L.D, Koudelka, G.B, Watkins, D, Hsiao, C, Woods, K. 登録日 2007-08-22 公開日 2008-04-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 P22 c2 repressor-operator complex: mechanisms of direct and indirect readout Biochemistry, 47, 2008
3QQ6	The N-terminal DNA binding domain of SinR from Bacillus subtilis 分子名称: HTH-type transcriptional regulator sinR 著者 Colledge, V, Fogg, M.J, Levdikov, V.M, Dodson, E.J, Wilkinson, A.J. 登録日 2011-02-15 公開日 2011-06-15 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and Organisation of SinR, the Master Regulator of Biofilm Formation in Bacillus subtilis. J.Mol.Biol., 411, 2011
3ZHI	N-terminal domain of the CI repressor from bacteriophage TP901-1 分子名称: CI 著者 Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. 登録日 2012-12-21 公開日 2013-12-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
2R63	STRUCTURAL ROLE OF A BURIED SALT BRIDGE IN THE 434 REPRESSOR DNA-BINDING DOMAIN, NMR, 20 STRUCTURES 分子名称: REPRESSOR PROTEIN FROM BACTERIOPHAGE 434 著者 Pervushin, K.V, Billeter, M, Siegal, G, Wuthrich, K. 登録日 1996-11-13 公開日 1997-06-16 最終更新日 2021-11-03 実験手法 SOLUTION NMR 主引用文献 Structural role of a buried salt bridge in the 434 repressor DNA-binding domain. J.Mol.Biol., 264, 1996
3ZHM	N-terminal domain of the CI repressor from bacteriophage TP901-1 in complex with the OL2 operator half-site 分子名称: 5'-D(*AP*CP*GP*TP*GP*AP*AP*CP*TP*TP*GP*CP*AP*CP *TP*TP*GP*A)-3', 5'-D(*AP*GP*TP*TP*CP*AP*CP*GP*TP*TP*CP*AP*AP*GP *TP*GP*CP*A)-3', CI 著者 Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. 登録日 2012-12-22 公開日 2013-12-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
3S8Q	Crystal structure of the R-M controller protein C.Esp1396I OL operator complex 分子名称: DNA (5'-D(*AP*TP*GP*TP*GP*AP*CP*TP*TP*AP*TP*AP*GP*TP*CP*CP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*GP*AP*CP*TP*AP*TP*AP*AP*GP*TP*CP*AP*CP*A)-3'), R-M CONTROLLER PROTEIN 著者 McGeehan, J.E, Ball, N.J, Streeter, S.D, Thresh, S.-J, Kneale, G.G. 登録日 2011-05-30 公開日 2012-01-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex. Nucleic Acids Res., 40, 2012
3TRB	Structure of an addiction module antidote protein of a HigA (higA) family from Coxiella burnetii 分子名称: Virulence-associated protein I 著者 Cheung, J, Franklin, M.C, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J. 登録日 2011-09-09 公開日 2011-09-28 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
3CEC	Crystal structure of a putative antidote protein of plasmid maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at 1.60 A resolution 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, DI(HYDROXYETHYL)ETHER, Putative antidote protein of plasmid maintenance system 著者 Joint Center for Structural Genomics (JCSG) 登録日 2008-02-28 公開日 2008-03-11 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of putative antidote protein of plasmid maintenance system (ZP_00107635.1) from Nostoc punctiforme PCC 73102 at 1.60 A resolution To be published
3CRO	THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 CRO) 著者 Mondragon, A, Harrison, S.C. 登録日 1990-07-06 公開日 1991-10-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The phage 434 Cro/OR1 complex at 2.5 A resolution. J.Mol.Biol., 219, 1991
1PER	THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES 分子名称: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR) 著者 Rodgers, D.W, Harrison, S.C. 登録日 1993-11-09 公開日 1994-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites. Structure, 1, 1993
3CLC	Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in Complex with its Natural 35 Base-Pair Operator 分子名称: 35-MER, MAGNESIUM ION, Regulatory protein 著者 McGeehan, J.E, Streeter, S.D, Thresh, S.J, Ball, N, Ravelli, R.B, Kneale, G.G. 登録日 2008-03-18 公開日 2008-07-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. Nucleic Acids Res., 36, 2008
1PRA	DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN (RESIDUES 1 TO 69) OF THE 434 REPRESSOR AND COMPARISON WITH THE X-RAY CRYSTAL STRUCTURE 分子名称: 434 REPRESSOR 著者 Neri, D, Billeter, M, Wuthrich, K. 登録日 1991-11-18 公開日 1993-10-31 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Determination of the nuclear magnetic resonance solution structure of the DNA-binding domain (residues 1 to 69) of the 434 repressor and comparison with the X-ray crystal structure. J.Mol.Biol., 223, 1992
6H49	A polyamorous repressor: deciphering the evolutionary strategy used by the phage-inducible chromosomal islands to spread in nature. 分子名称: Orf20, SULFATE ION 著者 Ciges-Tomas, J.R, Alite, C, Bowring, J.Z, Donderis, J, Penades, J.R, Marina, A. 登録日 2018-07-20 公開日 2019-08-28 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The structure of a polygamous repressor reveals how phage-inducible chromosomal islands spread in nature. Nat Commun, 10, 2019
1R69	STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF PHAGE 434 REPRESSOR AT 2.0 ANGSTROMS RESOLUTION 分子名称: REPRESSOR PROTEIN CI 著者 Mondragon, A, Subbiah, S, Alamo, S.C, Drottar, M, Harrison, S.C. 登録日 1988-12-08 公開日 1989-10-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution. J.Mol.Biol., 205, 1989
1R63	STRUCTURAL ROLE OF A BURIED SALT BRIDGE IN THE 434 REPRESSOR DNA-BINDING DOMAIN, NMR, 20 STRUCTURES 分子名称: REPRESSOR PROTEIN FROM BACTERIOPHAGE 434 著者 Pervushin, K.V, Billeter, M, Siegal, G, Wuthrich, K. 登録日 1996-11-08 公開日 1997-06-16 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Structural role of a buried salt bridge in the 434 repressor DNA-binding domain. J.Mol.Biol., 264, 1996
3EUS	The crystal structure of the DNA binding protein from Silicibacter pomeroyi 分子名称: DNA-binding protein 著者 Zhang, R, Li, H, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-10-10 公開日 2008-11-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The crystal structure of the DNA binding protein from Silicibacter pomeroyi To be Published
1RPE	THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3'), PROTEIN (434 REPRESSOR) 著者 Shimon, L.J.W, Harrison, S.C. 登録日 1993-03-24 公開日 1994-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The phage 434 OR2/R1-69 complex at 2.5 A resolution. J.Mol.Biol., 232, 1993
6IRP	Crystal structure of HigA from Shigella flexneri 分子名称: Antitoxin HigA 著者 Yoon, W.S, Seok, S.H, Seo, M.D. 登録日 2018-11-14 公開日 2019-09-04 実験手法 X-RAY DIFFRACTION (1.954 Å) 主引用文献 Structural changes of antitoxin HigA from Shigella flexneri by binding of its cognate toxin HigB. Int.J.Biol.Macromol., 130, 2019
7CSW	Pseudomonas aeruginosa antitoxin HigA with pa2440 promoter 分子名称: HTH cro/C1-type domain-containing protein, pa2440 著者 Song, Y.J, Luo, G.H, Bao, R. 登録日 2020-08-17 公開日 2021-01-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs. Environ.Microbiol., 23, 2021
7CSV	Pseudomonas aeruginosa antitoxin HigA 分子名称: HTH cro/C1-type domain-containing protein 著者 Song, Y.J, Luo, G.H, Bao, R. 登録日 2020-08-17 公開日 2021-01-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs. Environ.Microbiol., 23, 2021

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