PDB: 1429 resultsInfo pagesStatus searchChemie searchBIRD

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8DMS	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose To Be Published
8DMQ	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Structure of Legionella pneumophila macrodomain effector MavL in complex with ubiquitin vinyl methyl ester To Be Published
8E7O	CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN Descriptor: SULFATE ION, Ubiquitin Authors: Lemma, B.E, Fushman, D. Deposit date: 2022-08-24 Release date: 2022-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
6QK9	A dimeric ubiquitin formed by a single amino acid substitution Descriptor: Polyubiquitin-B Authors: Gabrielsen, M, Kowalczyk, D, Buetow, L, Huang, D.T. Deposit date: 2019-01-28 Release date: 2019-07-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.231 Å) Cite: Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation. Structure, 27, 2019
6QF8	Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method Descriptor: Polyubiquitin-B Authors: ElGamacy, M, Truffault, V, Zhu, H, Coles, M. Deposit date: 2019-01-09 Release date: 2019-04-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mapping Local Conformational Landscapes of Proteins in Solution. Structure, 27, 2019
8F1F	Structure of K48-linked tri-ubiquitin in complex with cyclic peptide Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Non-proteinogenic cyclic peptide (inhibitor), ... Authors: Lubkowski, J, Fushman, D, Lemma, B. Deposit date: 2022-11-05 Release date: 2023-11-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
4ZPZ	Crystal Structure of Semi-synthetic Ubiquitin with Phospho-Ser65 and Ala46Cys Descriptor: Polyubiquitin-B Authors: Han, C, Virdee, S. Deposit date: 2015-05-08 Release date: 2015-06-10 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.54 Å) Cite: A Versatile Strategy for the Semisynthetic Production of Ser65 Phosphorylated Ubiquitin and Its Biochemical and Structural Characterisation. Chembiochem, 16, 2015
4ZQS	New compact conformation of linear Ub2 structure Descriptor: ubiquitin Authors: Thach, T.T, Shin, D, Han, S, Lee, S. Deposit date: 2015-05-11 Release date: 2016-04-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.804 Å) Cite: New conformations of linear polyubiquitin chains from crystallographic and solution-scattering studies expand the conformational space of polyubiquitin. Acta Crystallogr D Struct Biol, 72, 2016
4Z9S	Non-covalent assembly of monoubiquitin that mimics K11 poly-ubiquitin Descriptor: MALONIC ACID, THIOCYANATE ION, Ubiquitin-40S ribosomal protein S27a Authors: Levin-Kravets, O, Prag, G. Deposit date: 2015-04-11 Release date: 2015-07-29 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Tetrameric Assembly of Monoubiquitin Accurately Mimics the Lys11 Polyubiquitin Chain Structure. Biochemistry, 54, 2015
5AF4	Structure of Lys33-linked diUb Descriptor: GLYCEROL, SULFATE ION, UBIQUITIN Authors: Michel, M.A, Elliott, P.R, Swatek, K.N, Simicek, M, Pruneda, J.N, Wagstaff, J.L, Freund, S.M.V, Komander, D. Deposit date: 2015-01-19 Release date: 2015-03-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Assembly and Specific Recognition of K29- and K33-Linked Polyubiquitin. Mol.Cell, 58, 2015
5AF5	Structure of Lys33-linked triUb S.G. P 212121 Descriptor: POLYUBIQUITIN-C Authors: Michel, M.A, Elliott, P.R, Swatek, K.N, Simicek, M, Pruneda, J.N, Wagstaff, J.L, Freund, S.M.V, Komander, D. Deposit date: 2015-01-19 Release date: 2015-03-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Assembly and Specific Recognition of K29- and K33-Linked Polyubiquitin. Mol.Cell, 58, 2015
5CHW	Structure of ISG15 in space group P212121 Descriptor: GLYCEROL, SULFATE ION, Ubiquitin-like protein ISG15 Authors: Fritz, G, Basters, A. Deposit date: 2015-07-10 Release date: 2016-09-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of ISG15 in space group P212121 To Be Published
5CHF	Crystal structure of murine ISG15 in space group P21212 Descriptor: GLYCEROL, SULFATE ION, Ubiquitin-like protein ISG15 Authors: Fritz, G, Basters, A. Deposit date: 2015-07-10 Release date: 2016-09-28 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of murine ISG15 in space group P21212 To Be Published
5DK8	Human ubiquitin in the P1 space group Descriptor: MAGNESIUM ION, Polyubiquitin-B Authors: Camara-Artigas, A, Bacarizo, J. Deposit date: 2015-09-03 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.32 Å) Cite: New crystal form of human ubiquitin in the presence of magnesium. Acta Crystallogr.,Sect.F, 72, 2016
5TLA	Crystal structure of mouse ISG15 Descriptor: Ubiquitin-like protein ISG15 Authors: Goodwin, O.Y, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D. Deposit date: 2016-10-10 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.244 Å) Cite: Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species. J. Mol. Biol., 429, 2017
5TOG	Room temperature structure of ubiquitin variant u7ub25.2540 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5TOF	Room temperature structure of ubiquitin variant u7ub25 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5TR5	Solution structure of Serine 65 phosphorylated UBL domain from parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Aguirre, J.D, Dunkerley, K.M, Mercier, P, Shaw, G.S. Deposit date: 2016-10-25 Release date: 2016-12-21 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5UJL	Representative 1-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2017-10-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5VF0	Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2017-04-06 Release date: 2017-05-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 Descriptor: NITRATE ION, Polyubiquitin Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-04-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5VSZ	Structure of the Ubl domain of Sacsin mutant L78M Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-15 Release date: 2017-05-31 Last modified: 2018-08-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5W46	Structure of S65D Phosphomimetic Ubiquitin Refined at 1.2 Angstroms Resolution Descriptor: MAGNESIUM ION, Polyubiquitin-B Authors: Kazansky, Y, Singh, R.K, Fushman, D. Deposit date: 2017-06-09 Release date: 2017-07-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions. Sci Rep, 8, 2018
5VSX	Structure of the Ubl domain of Sacsin Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-13 Release date: 2017-05-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018

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