PDB: 1446 resultsInfo pagesStatus searchChemie searchBIRD

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7ZX8	Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. Deposit date: 2022-05-20 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
2E9R	Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin Descriptor: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3', 5'-R(*CP*CP*C*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ... Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2007-01-26 Release date: 2007-06-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Sequential structures provide insights into the fidelity of RNA replication Proc.Natl.Acad.Sci.Usa, 104, 2007
2E9T	Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5F-UTP Descriptor: 5'-R(*GP*GP*GP*CP*CP*CP*(5FU))-3', 5'-R(P*UP*AP*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ... Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2007-01-26 Release date: 2007-06-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Sequential structures provide insights into the fidelity of RNA replication Proc.Natl.Acad.Sci.Usa, 104, 2007
2N3Q	NMR structure of the II-III-VI three-way junction from the VS ribozyme Descriptor: RNA (62-MER) Authors: Bonneau, E, Girard, N, Lemieux, S, Legault, P. Deposit date: 2015-06-09 Release date: 2015-07-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
7Z0O	Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA Descriptor: Histone H3, Histone H4, Non-template DNA, ... Authors: Baudin, F, Murciano, B, Fung, H.K.H, Fromm, S.A, Mueller, C.W. Deposit date: 2022-02-23 Release date: 2022-04-27 Last modified: 2022-05-04 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Mechanism of RNA polymerase I selection by transcription factor UAF. Sci Adv, 8, 2022
8WA0	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1 Descriptor: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8WA1	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2 Descriptor: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8W9Z	The cryo-EM structure of the Nicotiana tabacum PEP-PAP Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
1F78	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-26 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F79	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7H	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7I	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
4V8S	Archaeal RNAP-DNA binary complex at 4.32Ang Descriptor: 5'-D(*AP*TP*AP*GP*AP*GP*TP*AP*TP*AP*AP*GP*AP*TP *AP*G)-3', 5'-D(*TP*CP*TP*TP*AP*TP*AP*CP*TP*CP*TP*AP*TP*CP)-3', DNA-DIRECTED RNA POLYMERASE, ... Authors: Wojtas, M.N, Mogni, M, Millet, O, Bell, S.D, Abrescia, N.G.A. Deposit date: 2012-07-12 Release date: 2014-07-09 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.323 Å) Cite: Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res., 40, 2012
6BM2	Pol II elongation complex with an abasic lesion at i-1 position Descriptor: DNA (5'-D(P*CP*AP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Wang, W, Wang, D. Deposit date: 2017-11-13 Release date: 2018-02-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.403 Å) Cite: Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BLO	Pol II elongation complex with an abasic lesion at i+1 position Descriptor: DNA (5'-D(P*AP*(3DR)P*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Wang, W, Wang, D. Deposit date: 2017-11-10 Release date: 2018-02-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.401 Å) Cite: Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BM4	Pol II elongation complex with an abasic lesion at i-1 position,soaking UMPNPP Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, DNA (5'-D(P*CP*AP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, W, Wang, D. Deposit date: 2017-11-13 Release date: 2018-02-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.951 Å) Cite: Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BQF	Pol II elongation complex with 'dT-AP' at i+1, i-1 position Descriptor: DNA (5'-D(P*CP*TP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Wang, W, Wang, D. Deposit date: 2017-11-27 Release date: 2018-02-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BLP	Pol II elongation complex with an abasic lesion at i+1 position, soaking AMPCPP Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (5'-D(P*AP*(3DR)P*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, W, Wang, D. Deposit date: 2017-11-11 Release date: 2018-02-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.203 Å) Cite: Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7OKX	Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite structure) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P. Deposit date: 2021-05-18 Release date: 2021-07-14 Last modified: 2021-09-01 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Allosteric transcription stimulation by RNA polymerase II super elongation complex. Mol.Cell, 81, 2021
7OKY	Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P. Deposit date: 2021-05-18 Release date: 2021-07-14 Last modified: 2021-09-01 Method: ELECTRON MICROSCOPY (4.14 Å) Cite: Allosteric transcription stimulation by RNA polymerase II super elongation complex. Mol.Cell, 81, 2021
7OL0	Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P. Deposit date: 2021-05-18 Release date: 2021-07-14 Last modified: 2021-09-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Allosteric transcription stimulation by RNA polymerase II super elongation complex. Mol.Cell, 81, 2021
3H3V	Yeast RNAP II containing poly(A)-signal sequence in the active site Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*GP*CP*TP*GP*CP*TP*TP*TP*AP*TP*TP*GP*CP*AP*TP*T)-3', 5'-D(*CP*AP*GP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*CP*AP*AP*UP*AP*AP*A)-3', ... Authors: Dengl, S, Cramer, P. Deposit date: 2009-04-17 Release date: 2009-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (4 Å) Cite: Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro J.Biol.Chem., 284, 2009
7Q5B	Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene Descriptor: DNA (19-MER), DNA (31-MER), DNA (34-MER), ... Authors: Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A. Deposit date: 2021-11-03 Release date: 2022-01-26 Method: ELECTRON MICROSCOPY (3.98 Å) Cite: Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes. Nat Commun, 12, 2021
6GYK	Structure of a yeast closed complex (core CC1) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. Deposit date: 2018-06-30 Release date: 2018-12-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
6GYM	Structure of a yeast closed complex with distorted DNA (CCdist) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. Deposit date: 2018-06-30 Release date: 2018-12-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019

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