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PDB: 44 results

3QHR
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Structure of a pCDK2/CyclinA transition-state mimic
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CDK2 substrate peptide: PKTPKKAKKL, CHLORIDE ION, ...
Authors:Young, M.A, Jacobsen, D.M, Bao, Z.Q.
Deposit date:2011-01-26
Release date:2011-05-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Briefly Bound to Activate: Transient Binding of a Second Catalytic Magnesium Activates the Structure and Dynamics of CDK2 Kinase for Catalysis.
Structure, 19, 2011
3QHW
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Structure of a pCDK2/CyclinA transition-state mimic
Descriptor: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, CDK2 substrate peptide: PKTPKKAKKL, ...
Authors:Young, M.A, Jacobsen, D.M, Bao, Z.Q.
Deposit date:2011-01-26
Release date:2011-05-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Briefly Bound to Activate: Transient Binding of a Second Catalytic Magnesium Activates the Structure and Dynamics of CDK2 Kinase for Catalysis.
Structure, 19, 2011
1SL3
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crystal structue of Thrombin in complex with a potent P1 heterocycle-Aryl based inhibitor
Descriptor: (2-[6-CHLORO-3-{[2,2-DIFLUORO-2-(1-OXIDOPYRIDIN-2-YL)ETHYL]AMINO}-2-OXOPYRAZIN-1(2H)-YL]-N-[5-CHLORO-2-(1H-TETRAZOL-1-YL)BENZYL]ACETAMIDE, Hirudin, thrombin
Authors:Young, M.B, Barrow, J.C, Glass, K.L, Lundell, G.F, Newton, C.L, Pellicore, J.M, Rittle, K.E, Selnick, H.G, Stauffer, K.J, Vacca, J.P, Williams, P.D, Bohn, D, Clayton, F.C, Cook, J.J, Krueger, J.A, Kuo, L.C, Lewis, S.D, Lucas, B.J, McMasters, D.R, Miller-Stein, C, Pietrak, B.L.
Deposit date:2004-03-05
Release date:2004-08-03
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Discovery and evaluation of potent P1 aryl heterocycle-based thrombin inhibitors
J.Med.Chem., 47, 2004
2F4J
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BU of 2f4j by Molmil
Structure of the Kinase Domain of an Imatinib-Resistant Abl Mutant in Complex with the Aurora Kinase Inhibitor VX-680
Descriptor: CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE, Proto-oncogene tyrosine-protein kinase ABL1
Authors:Young, M.A, Shah, N.P, Chao, L.H, Zarrinkar, P, Sawyers, P, Kuriyan, J.
Deposit date:2005-11-23
Release date:2006-01-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure of the kinase domain of an imatinib-resistant Abl mutant in complex with the Aurora kinase inhibitor VX-680.
Cancer Res., 66, 2006
4R2I
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The Crystal Structure of STIV B204 complexed with AMP-PNP
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, STIV B204 ATPase, ZINC ION
Authors:Dellas, N, Nicolay, S.J, Young, M.J.
Deposit date:2014-08-12
Release date:2016-01-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.
J.Virol., 90, 2015
4R2H
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BU of 4r2h by Molmil
The Crystal Structure of B204, the DNA-packaging ATPase from Sulfolobus Turreted Icosahedral Virus
Descriptor: STIV B204 ATPase, ZINC ION
Authors:Dellas, N, Nicolay, S.J, Young, M.J.
Deposit date:2014-08-12
Release date:2016-01-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.
J.Virol., 90, 2015
1ZA7
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BU of 1za7 by Molmil
The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.
Descriptor: Coat protein
Authors:Bothner, B, Speir, J.A, Qu, C, Willits, D.A, Young, M.J, Johnson, J.E.
Deposit date:2005-04-05
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics.
J.Virol., 80, 2006
8SBK
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BU of 8sbk by Molmil
Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI (ATG2A).
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, ...
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
2C0N
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Crystal Structure of A197 from STIV
Descriptor: 1,4-DIETHYLENE DIOXIDE, A197, NICKEL (II) ION, ...
Authors:Larson, E.T, Reiter, D, Young, M, Lawrence, C.M.
Deposit date:2005-09-06
Release date:2005-09-29
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of A197 from Sulfolobus Turreted Icosahedral Virus: A Crenarchaeal Viral Glycosyltransferase Exhibiting the Gt-A Fold.
J.Virol., 80, 2006
8SBL
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Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI
Descriptor: Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, MHC class I antigen
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
2CLB
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The structure of the DPS-like protein from Sulfolobus solfataricus reveals a bacterioferritin-like di-metal binding site within a Dps- like dodecameric assembly
Descriptor: DPS-LIKE PROTEIN, FE (III) ION, ZINC ION
Authors:Gauss, G.H, Benas, P, Wiedenheft, B, Young, M, Douglas, T, Lawrence, C.M.
Deposit date:2006-04-26
Release date:2006-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Dps-Like Protein from Sulfolobus Solfataricus Reveals a Bacterioferritin-Like Dimetal Binding Site within a Dps-Like Dodecameric Assembly.
Biochemistry, 45, 2006
1TBX
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BU of 1tbx by Molmil
Crystal structure of SSV1 F-93
Descriptor: Hypothetical 11.0 kDa protein
Authors:Kraft, P, Oeckinghaus, A, Kummel, D, Gauss, G.H, Wiedenheft, B, Young, M, Lawrence, C.M.
Deposit date:2004-05-20
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein.
J.Virol., 78, 2004
3J31
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BU of 3j31 by Molmil
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Descriptor: A223 penton base, A55 membrane protein, C381 turret protein, ...
Authors:Veesler, D, Ng, T.S, Sendamarai, A.K, Eilers, B.J, Lawrence, C.M, Lok, S.M, Young, M.J, Johnson, J.E, Fu, C.-Y.
Deposit date:2013-02-18
Release date:2013-05-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 110, 2013
3PS0
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BU of 3ps0 by Molmil
The structure of the CRISPR-associated protein, csa2, from Sulfolobus solfataricus
Descriptor: CRISPR-Associated protein, CSA2
Authors:Lintner, N.G, Sdano, M, Young, M.J, Lawrence, C.M.
Deposit date:2010-11-30
Release date:2011-04-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE).
J.Biol.Chem., 286, 2011
3RKL
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BU of 3rkl by Molmil
The crystal structure of A81 from Sulfolobus Turreted Icosahedral Virus
Descriptor: ACETATE ION, STIV-A81
Authors:Lintner, N.G, Larson, E.T, Young, M.J, Lawrence, C.M.
Deposit date:2011-04-18
Release date:2012-05-09
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of A81 from Sulfolobus Turreted Icosahedral Virus
To be Published
2VZB
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BU of 2vzb by Molmil
A Dodecameric Thioferritin in the Bacterial Domain, Characterization of the Bacterioferritin-Related Protein from Bacteroides fragilis
Descriptor: BENZAMIDINE, FE (III) ION, MAGNESIUM ION, ...
Authors:Gauss, G.H, Young, M.J, Douglas, T, Lawrence, C.M.
Deposit date:2008-07-31
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the Bacteroides Fragilis Bfr Gene Product Identifies a Bacterial Dps-Like Protein and Suggests Evolutionary Links in the Ferritin Superfamily.
J.Bacteriol., 194, 2012
2WBT
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BU of 2wbt by Molmil
The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA
Descriptor: B-129, ZINC ION
Authors:Eilers, B.J, Menon, S, Windham, A.B, Kraft, P, Dlakic, M, Young, M.J, Lawrence, C.M.
Deposit date:2009-03-03
Release date:2010-03-31
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA
To be Published
3UXU
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BU of 3uxu by Molmil
The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans
Descriptor: PHOSPHATE ION, Probable integrase
Authors:Eilers, B.J, Young, M.J, Lawrence, C.M.
Deposit date:2011-12-05
Release date:2012-05-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans.
J.Virol., 86, 2012
8ESH
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BU of 8esh by Molmil
Structure of chimeric HLA-A*02:01 bound to CMV peptide
Descriptor: Beta-2-microglobulin, CMV peptide, HLA-A*02:01
Authors:Florio, T.J, Ani, O, Young, M.C, Mallik, L, Sgourakis, N.G.
Deposit date:2022-10-14
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Decoupling peptide binding from T cell receptor recognition with engineered chimeric MHC-I molecules.
Front Immunol, 14, 2023
2W8M
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BU of 2w8m by Molmil
Structure of D212, a nuclease from a fusselovirus.
Descriptor: ORF D212
Authors:Menon, S.K, Young, M.J, Lawrence, C.M.
Deposit date:2009-01-17
Release date:2009-02-03
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.
J. Virol., 84, 2010
1JQL
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BU of 1jql by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)
Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-09-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
1JQJ
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Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex
Descriptor: DNA polymerase III, beta chain, delta subunit
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-11-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
4IND
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BU of 4ind by Molmil
The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus
Descriptor: C381 turret protein, DIHYDROGENPHOSPHATE ION
Authors:Eilers, B.J, Kraft, D, Burgess, M.C, Young, M.J, Lawrence, C.M.
Deposit date:2013-01-04
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus
To be Published
3RTY
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BU of 3rty by Molmil
Structure of an Enclosed Dimer Formed by The Drosophila Period Protein
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Period circadian protein
Authors:King, H.A, Hoelz, A, Crane, B.R, Young, M.W.
Deposit date:2011-05-04
Release date:2011-12-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of an enclosed dimer formed by the Drosophila period protein.
J.Mol.Biol., 413, 2011
2VQC
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Structure of a DNA binding winged-helix protein, F-112, from Sulfolobus Spindle-shaped Virus 1.
Descriptor: HYPOTHETICAL 13.2 KDA PROTEIN
Authors:Menon, S.K, Kraft, P, Corn, G.J, Wiedenheft, B, Young, M.J, Lawrence, C.M.
Deposit date:2008-03-12
Release date:2008-05-06
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cysteine Usage in Sulfolobus Spindle-Shaped Virus 1 and Extension to Hyperthermophilic Viruses in General.
Virology, 376, 2008

 

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