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PDB: 54 results

8FXQ
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The Crystal Sturucture of Rhizopuspepsin with a bound modified peptide inhibitor generated by de novo drug design.
Descriptor: ALA-CYS-VAL-LYS, CYCLOHEXANE, Rhizopuspepsin, ...
Authors:Satyshur, K.A, Rich, D.H, Ripka, A.S.
Deposit date:2023-01-25
Release date:2023-02-08
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Aspartic protease inhibitors designed from computer-generated templates bind as predicted.
Org Lett, 3, 2001
2EYU
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BU of 2eyu by Molmil
The Crystal Structure of the C-terminal Domain of Aquifex aeolicus PilT
Descriptor: SULFATE ION, twitching motility protein PilT
Authors:Satyshur, K.A, Worzalla, G.A, Meyer, L.S, Heiniger, E.K, Aukema, K.G, Forest, K.T.
Deposit date:2005-11-09
Release date:2006-11-21
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
Structure, 15, 2007
2EWW
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BU of 2eww by Molmil
Crystal Structure of the Pilus Retraction Motor PilT and Bound ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, twitching motility protein PilT
Authors:Satyshur, K.A, Forest, K.T.
Deposit date:2005-11-07
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
Structure, 15, 2007
2EWV
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Crystal Structure of the Pilus Retraction Motor PilT and Bound ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, twitching motility protein PilT
Authors:Satyshur, K.A, Forest, K.T.
Deposit date:2005-11-07
Release date:2006-11-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
Structure, 15, 2007
6VBS
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BU of 6vbs by Molmil
The C2 Crystal form of SodCI Superoxide Dismutase at 1.7 A resolution with 6 molecules in the asymmetric unit.
Descriptor: COPPER (II) ION, SULFATE ION, Superoxide dismutase [Cu-Zn], ...
Authors:Satyshur, K.A, Forest, K.T, Newhouse, P.W.
Deposit date:2019-12-19
Release date:2020-12-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Muropeptide Binding of the Virulence Factor Superoxide Dismutase C1 from Salmonella Typhimurium
To Be Published
6VBT
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The P212121 Crystal structure of SodCI Superoxide Dismutase with 2 molecules in the asymmetric unit at 1.7 A resolution
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Satyshur, K.A, Forest, K.T, Newhouse, P.W.
Deposit date:2019-12-19
Release date:2020-12-30
Last modified:2022-03-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Muropeptide Binding of the Virulence Factor Superoxide Dismutase C1 from Salmonella Typhimurium
To Be Published
6W1I
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BU of 6w1i by Molmil
Re-interpretation of ppGpp (G4P) electron density in the deposited crystal structure of Xanthine phosphoribosyltransferase (XPRT) (1Y0B).
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, SODIUM ION, Xanthine phosphoribosyltransferase
Authors:Satyshur, K.A, Anderson, B.W, Keck, J.L, Midwest Center for Structural Genomics (MCSG)
Deposit date:2020-03-04
Release date:2020-07-29
Last modified:2021-04-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism of Regulation of the Purine Salvage Enzyme XPRT by the Alarmones pppGpp, ppGpp, and pGpp.
J.Mol.Biol., 432, 2020
6D9Q
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BU of 6d9q by Molmil
The sulfate-bound crystal structure of HPRT (hypoxanthine phosphoribosyltransferase)
Descriptor: GLYCEROL, Hypoxanthine phosphoribosyltransferase, SULFATE ION
Authors:Satyshur, K.A, Dubiel, K, Anderson, B, Wolak, C, Keck, J.L.
Deposit date:2018-04-30
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.056 Å)
Cite:Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.
Elife, 8, 2019
6D9R
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BU of 6d9r by Molmil
The substrate-bound crystal structure of HPRT (hypoxanthine phosphoribosyltransferase)
Descriptor: 1,2-ETHANEDIOL, 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 9-DEAZAGUANINE, ...
Authors:Satyshur, K.A, Wolak, C, Anderson, B, Dubiel, K, Keck, J.L.
Deposit date:2018-04-30
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.
Elife, 8, 2019
6D9S
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BU of 6d9s by Molmil
The (p)ppGpp-bound crystal structure of HPRT (hypoxanthine phosphoribosyltransferase)
Descriptor: DI(HYDROXYETHYL)ETHER, GUANOSINE-5',3'-TETRAPHOSPHATE, Hypoxanthine phosphoribosyltransferase, ...
Authors:Satyshur, K.A, Dubiel, K, Anderson, B, Wolak, C, Keck, J.L.
Deposit date:2018-04-30
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.
Elife, 8, 2019
3IPN
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BU of 3ipn by Molmil
Crystal Structure of fluorine and methyl modified collagen: (mepFlpgly)7
Descriptor: CARBONATE ION, Non-natural Collagen
Authors:Satyshur, K.A, Shoulders, M.D, Raines, R.T, Forest, K.T.
Deposit date:2009-08-18
Release date:2010-02-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Stereoelectronic and steric effects in side chains preorganize a protein main chain.
Proc.Natl.Acad.Sci.USA, 107, 2010
6DCR
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BU of 6dcr by Molmil
E. coli PriA helicase winged helix domain deletion protein
Descriptor: Primosomal protein N', SULFATE ION, ZINC ION
Authors:Satyshur, K.A, Windgassen, T.A, Keck, J.L.
Deposit date:2018-05-08
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Structure-specific DNA replication-fork recognition directs helicase and replication restart activities of the PriA helicase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DGD
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BU of 6dgd by Molmil
PriA helicase bound to dsDNA of a DNA replication fork
Descriptor: DNA (5'-D(P*AP*GP*CP*AP*CP*GP*CP*CP*GP*AP*CP*T)-3'), DNA (5'-D(P*GP*AP*GP*CP*AP*CP*GP*CP*CP*GP*AP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*CP*GP*TP*GP*CP*TP*C)-3'), ...
Authors:Satyshur, K.A, Windgassen, T.A, Keck, J.L.
Deposit date:2018-05-17
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.823 Å)
Cite:Structure-specific DNA replication-fork recognition directs helicase and replication restart activities of the PriA helicase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3HL8
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BU of 3hl8 by Molmil
Crystal structure of exonuclease I in complex with inhibitor BCBP
Descriptor: (5R)-3-tert-butyl-1-(6-chloro-1,3-benzothiazol-2-yl)-4,5-dihydro-1H-pyrazol-5-ol, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Satyshur, K.A.
Deposit date:2009-05-27
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance
Proc.Natl.Acad.Sci.USA, 107, 2010
3HP9
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BU of 3hp9 by Molmil
Crystal structure of SSB/Exonuclease I in complex with inhibitor CFAM
Descriptor: 1,2-ETHANEDIOL, 2-{[2-chloro-5-(trifluoromethyl)phenyl]amino}-5-methoxybenzoic acid, DIMETHYL SULFOXIDE, ...
Authors:Satyshur, K.A.
Deposit date:2009-06-03
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance
Proc.Natl.Acad.Sci.USA, 107, 2010
7R7J
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BU of 7r7j by Molmil
Crystal structure of RadD with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative DNA repair helicase RadD, ...
Authors:Osorio Garcia, M.A, Satyshur, K.A, Keck, J.L, Cox, M.M.
Deposit date:2021-06-24
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:X-ray crystal structure of the Escherichia coli RadD DNA repair protein bound to ADP reveals a novel zinc ribbon domain.
Plos One, 17, 2022
5IC5
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BU of 5ic5 by Molmil
Bacteriophytochrome response regulator RtBRR
Descriptor: CACODYLATE ION, Candidate response regulator, CheY, ...
Authors:Baker, A.W, Satyshur, K.A, Forest, K.T.
Deposit date:2016-02-22
Release date:2016-03-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Arm-in-Arm Response Regulator Dimers Promote Intermolecular Signal Transduction.
J.Bacteriol., 198, 2016
4QRH
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BU of 4qrh by Molmil
Molecular mechanism and evolution of guanylate kinase regulation by (p)ppGpp
Descriptor: 1,2-ETHANEDIOL, Guanylate kinase, MAGNESIUM ION, ...
Authors:Liu, K, Krasny, K, Myers, A.R, Satyshur, K.A, Keck, J.L, Wnag, J.D.
Deposit date:2014-07-01
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular Mechanism and Evolution of Guanylate Kinase Regulation by (p)ppGpp.
Mol.Cell, 57, 2015
6NQC
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BU of 6nqc by Molmil
Crystal structure of a peptidase from an acI-B1 Actinobacterium
Descriptor: Cyanophycinase-like exopeptidase, SULFATE ION
Authors:Forest, K.T, Dwulit-Smith, J.R, Satyshur, K.A.
Deposit date:2019-01-20
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure of a peptidase from an acI-B1 Actinobacterium
To Be Published
8FAK
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BU of 8fak by Molmil
DNA replication fork binding triggers structural changes in the PriA DNA helicase that regulate the PriA-PriB replication restart pathway in E. coli
Descriptor: DNA (5'-D(P*CP*AP*GP*AP*CP*TP*CP*AP*TP*TP*TP*AP*GP*CP*CP*CP*TP*TP*AP*TP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*AP*TP*AP*AP*GP*GP*GP*CP*TP*GP*AP*GP*CP*AP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(P*TP*CP*GP*GP*CP*GP*TP*GP*CP*TP*C)-3'), ...
Authors:Duckworth, A.T, Ducos, P.L, McMillan, S.D, Satyshur, K.A, Blumenthal, K.H, Deorio, H.R, Larson, J.A, Sandler, S.J, Grant, T, Keck, J.L.
Deposit date:2022-11-28
Release date:2023-05-10
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Replication fork binding triggers structural changes in the PriA helicase that govern DNA replication restart in E. coli.
Nat Commun, 14, 2023
6NIV
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BU of 6niv by Molmil
Racemic Phenol-Soluble Modulin Alpha 3 Peptide
Descriptor: Phenol-soluble modulin PSM-alpha-3
Authors:Yao, Z, Cary, B.P, Bingman, C.A, Wang, C, Kreitler, D.F, Satyshur, K.A, Forest, K.T, Gellman, S.H.
Deposit date:2018-12-31
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Use of a Stereochemical Strategy To Probe the Mechanism of Phenol-Soluble Modulin alpha 3 Toxicity.
J.Am.Chem.Soc., 141, 2019
4Z1W
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BU of 4z1w by Molmil
CRYSTAL STRUCTURE OF MONOMERIC BACTERIOPHYTOCHROME mutant D207L Y263F From Synchrotron
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, 3-[2-[(Z)-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome
Authors:Bhattacharya, S, Satyshur, K.A, Wangkanont, K, Lehtivuori, H, Forest, K.T.
Deposit date:2015-03-27
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015
5W0W
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BU of 5w0w by Molmil
Crystal structure of Protein Phosphatase 2A bound to TIPRL
Descriptor: MANGANESE (II) ION, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, ...
Authors:Wu, C, Zheng, A, Li, J, Satyshur, K, Xing, Y.
Deposit date:2017-06-01
Release date:2018-01-17
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Methylation-regulated decommissioning of multimeric PP2A complexes.
Nat Commun, 8, 2017
4QMG
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BU of 4qmg by Molmil
The Structure of MTDH-SND1 Complex Reveals Novel Cancer-Promoting Interactions
Descriptor: CESIUM ION, GLYCEROL, Protein LYRIC, ...
Authors:Guo, F, Stanevich, V, Wan, L, Satyshur, K, Kang, Y, Xing, Y.
Deposit date:2014-06-16
Release date:2014-10-08
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Structural Insights into the Tumor-Promoting Function of the MTDH-SND1 Complex.
Cell Rep, 8, 2014
4ZRR
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BU of 4zrr by Molmil
Crystal Structure of Monomeric Bacteriophytochrome mutant D207L Y263F at 1.5 A resolution Using a home source.
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, 3-[2-[(Z)-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome, ...
Authors:Bhattacharya, S, Satyshur, K.A, Lehtivuori, H, Forest, K.T.
Deposit date:2015-05-12
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015

 

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