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PDB: 307 results

7EDO
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BU of 7edo by Molmil
First insight into marsupial MHC I peptide presentation: immune features of lower mammals paralleled with bats
Descriptor: Beta-2-microglobulin, CYS-ASN-VAL-THR-LEU-ASN-TYR-PRO, MHC class I antigen
Authors:Wang, P.Y, Yue, C, Lu, D, Liu, K.F, Liu, S, Yao, S.J, Chai, Y, Qi, J.X, Lou, Y.L, Sun, Z.Y, Gao, G.F, Liu, W.J.
Deposit date:2021-03-16
Release date:2021-08-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Peptide Presentations of Marsupial MHC Class I Visualize Immune Features of Lower Mammals Paralleled with Bats.
J Immunol., 207, 2021
6OIT
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BU of 6oit by Molmil
CryoEM structure of Arabidopsis DDR' complex (DRD1 peptide-DMS3-RDM1)
Descriptor: Protein CHROMATIN REMODELING 35, Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1
Authors:Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E.
Deposit date:2019-04-09
Release date:2019-07-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation.
Nat Commun, 10, 2019
6OIS
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BU of 6ois by Molmil
CryoEM structure of Arabidopsis DR complex (DMS3-RDM1)
Descriptor: Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1
Authors:Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E.
Deposit date:2019-04-09
Release date:2019-07-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation.
Nat Commun, 10, 2019
5HRC
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BU of 5hrc by Molmil
Crystal structure of an aspartate/glutamate racemase in complex with L-aspartate
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ASPARTIC ACID, aspartate/glutamate racemase
Authors:Liu, X, Gao, F, Ma, Y, Liu, S, Cui, Y, Yuan, Z, Kang, X.
Deposit date:2016-01-23
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.765 Å)
Cite:Crystal structure and molecular mechanism of an aspartate/glutamate racemase from Escherichia coli O157
Febs Lett., 590, 2016
5HQT
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BU of 5hqt by Molmil
Crystal structure of an aspartate/glutamate racemase from Escherichia coli O157
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, aspartate/glutamate racemase
Authors:Liu, X, Gao, F, Ma, Y, Liu, S, Cui, Y, Yuan, Z, Kang, X.
Deposit date:2016-01-22
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Crystal structure and molecular mechanism of an aspartate/glutamate racemase from Escherichia coli O157
Febs Lett., 590, 2016
5HRA
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BU of 5hra by Molmil
Crystal structure of an aspartate/glutamate racemase in complex with D-aspartate
Descriptor: D-ASPARTIC ACID, aspartate/glutamate racemase
Authors:Liu, X, Gao, F, Ma, Y, Liu, S, Cui, Y, Yuan, Z, Kang, X.
Deposit date:2016-01-23
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.597 Å)
Cite:Crystal structure and molecular mechanism of an aspartate/glutamate racemase from Escherichia coli O157
Febs Lett., 590, 2016
8E40
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BU of 8e40 by Molmil
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
Descriptor: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, RNA, ...
Authors:Ito, F, Alvarez-Cabrera, A.L, Liu, S, Yang, H, Shiriaeva, A, Zhou, Z.H, Chen, X.S.
Deposit date:2022-08-17
Release date:2023-01-11
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.
Sci Adv, 9, 2023
1SYX
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BU of 1syx by Molmil
The crystal structure of a binary U5 snRNP complex
Descriptor: CD2 antigen cytoplasmic tail-binding protein 2, Spliceosomal U5 snRNP-specific 15 kDa protein
Authors:Nielsen, T.K, Liu, S, Luhrmann, R, Ficner, R.
Deposit date:2004-04-02
Release date:2005-10-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.345 Å)
Cite:Structural basis for the bifunctionality of the U5 snRNP 52K protein (CD2BP2).
J.Mol.Biol., 369, 2007
1U53
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BU of 1u53 by Molmil
Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection
Descriptor: secreted protein ASP-2
Authors:Asojo, O.A, Goud, G, Dhar, K, Loukas, A, Zhan, B, Deumic, V, Liu, S, Borgstahl, G.E.O, Hotez, P.J.
Deposit date:2004-07-26
Release date:2005-02-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:X-ray structure of Na-ASP-2, a pathogenesis-related-1 protein from the nematode parasite, Necator americanus, and a vaccine antigen for human hookworm infection.
J.Mol.Biol., 346, 2005
4HQ1
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BU of 4hq1 by Molmil
Crystal structure of an LRR protein with two solenoids
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Probable receptor protein kinase TMK1, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Chai, J, Liu, P, Hu, Z, Zhou, B, Liu, S.
Deposit date:2012-10-25
Release date:2013-05-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of an LRR protein with two solenoids
Cell Res., 23, 2013
4GE6
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BU of 4ge6 by Molmil
Crystal structure of human protein tyrosine phosphatase PTPN9 (MEG2) complex with compound 7
Descriptor: N-(4-bromo-3-methylbenzoyl)-4-[difluoro(phosphono)methyl]-L-phenylalanyl-N~5~-(3-iodobenzoyl)-L-ornithyl-3-{[(4-hydroxy-3-methoxyphenyl)acetyl]amino}-D-alaninamide, Tyrosine-protein phosphatase non-receptor type 9
Authors:Zhang, Z.-Y, Liu, S, Zhang, S.
Deposit date:2012-08-01
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Highly Selective and Potent PTP-MEG2 Inhibitor with Therapeutic Potential for Type 2 Diabetes.
J.Am.Chem.Soc., 134, 2012
4GE2
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BU of 4ge2 by Molmil
Crystal structure of human protein tyrosine phosphatase PTPN9 (MEG2) complex with compound 3
Descriptor: N-acetyl-4-[difluoro(phosphono)methyl]-L-phenylalanyl-N~5~-(3-iodobenzoyl)-L-ornithinamide, Tyrosine-protein phosphatase non-receptor type 9
Authors:Zhang, Z.-Y, Liu, S, Zhang, S.
Deposit date:2012-08-01
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Highly Selective and Potent PTP-MEG2 Inhibitor with Therapeutic Potential for Type 2 Diabetes.
J.Am.Chem.Soc., 134, 2012
4GE5
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BU of 4ge5 by Molmil
Crystal structure of human protein tyrosine phosphatase PTPN9 (MEG2) complex with compound 5
Descriptor: N-(4-bromo-3-methylbenzoyl)-4-[difluoro(phosphono)methyl]-L-phenylalanyl-N~5~-(3-iodobenzoyl)-L-ornithinamide, Tyrosine-protein phosphatase non-receptor type 9
Authors:Zhang, Z.-Y, Liu, S, Zhang, S.
Deposit date:2012-08-01
Release date:2012-10-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Highly Selective and Potent PTP-MEG2 Inhibitor with Therapeutic Potential for Type 2 Diabetes.
J.Am.Chem.Soc., 134, 2012
4ZN2
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BU of 4zn2 by Molmil
Glycosyl hydrolase from Pseudomonas aeruginosa
Descriptor: PslG
Authors:Su, T, Liu, S, Gu, L.
Deposit date:2015-05-04
Release date:2016-01-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:PslG, a self-produced glycosyl hydrolase, triggers biofilm disassembly by disrupting exopolysaccharide matrix
Cell Res., 25, 2015
5HH9
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BU of 5hh9 by Molmil
Structure of PvdN from Pseudomonas aeruginosa
Descriptor: PYRIDOXAL-5'-PHOSPHATE, PvdN
Authors:Xia, H, Bai, G, Liu, S, Li, N, Xu, S, Chen, K, Yao, Q, Gu, L.
Deposit date:2016-01-10
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural and Biochemical Characterization of a Novel L-Cystine Desulfurase involved in the biosynthesis of the major siderophore pyoverdine in Pseudomonas aeruginosa
To Be Published
1X24
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BU of 1x24 by Molmil
Prl-1 (ptp4a)
Descriptor: protein tyrosine phosphatase 4a1
Authors:Zhang, Z.Y, Sun, J.P, Liu, S, Wang, W.Q, Yang, H.
Deposit date:2005-04-20
Release date:2005-10-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and Biochemical Properties of PRL-1, a Phosphatase Implicated in Cell Growth, Differentiation, and Tumor Invasion(,)
Biochemistry, 44, 2005
1WT9
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BU of 1wt9 by Molmil
crystal structure of Aa-X-bp-I, a snake venom protein with the activity of binding to coagulation factor X from Agkistrodon acutus
Descriptor: CALCIUM ION, agkisacutacin A chain, anticoagulant protein-B
Authors:Zhu, Z, Liu, S, Mo, X, Yu, X, Liang, Z, Zang, J, Zhao, W, Teng, M, Niu, L.
Deposit date:2004-11-18
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Characterizations and Crystal structures of two snake venom proteins with the activity of binding coagulation factor X from Agkistrodon acutus
To be Published
3L6Y
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BU of 3l6y by Molmil
Crystal structure of p120 catenin in complex with E-cadherin
Descriptor: Catenin delta-1, E-cadherin
Authors:Ishiyama, N, Lee, S.-H, Liu, S, Li, G.-Y, Smith, M.J, Reichardt, L.F, Ikura, M.
Deposit date:2009-12-27
Release date:2010-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesion.
Cell(Cambridge,Mass.), 141, 2010
1Y17
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BU of 1y17 by Molmil
crystal structure of Aa-X-bp-II, a snake venom protein with the activity of binding to coagulation factor X from Agkistrodon acutus
Descriptor: CALCIUM ION, anticoagulant protein A, anticoagulant protein-B
Authors:Zhu, Z, Liu, S, Mo, X, Yu, X, Liang, Z, Zang, J, Zhao, W, Teng, M, Niu, L.
Deposit date:2004-11-17
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Characterizations and Crystal structures of two snake venom proteins with the activity of binding coagulation factor X from Agkistrodon acutus
To be Published
3L6X
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BU of 3l6x by Molmil
Crystal structure of p120 catenin in complex with E-cadherin
Descriptor: Catenin delta-1, E-cadherin, SULFATE ION
Authors:Ishiyama, N, Lee, S.-H, Liu, S, Li, G.-Y, Smith, M.J, Reichardt, L.F, Ikura, M.
Deposit date:2009-12-27
Release date:2010-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesion.
Cell(Cambridge,Mass.), 141, 2010
3MOW
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BU of 3mow by Molmil
Crystal structure of SHP2 in complex with a tautomycetin analog TTN D-1
Descriptor: (2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,10S,12S,15E,17E)-18-carboxy-16-ethyl-3,7-dihydroxy-1,2,6,10,12-pentamethyl-5-oxooctade ca-15,17-dien-1-yl]oxy}-1-hydroxy-3-oxopropyl]-3-methylbut-2-enedioic acid, Tyrosine-protein phosphatase non-receptor type 11
Authors:Zhang, Z.-Y, Liu, S, Yu, Z, Yu, X.
Deposit date:2010-04-23
Release date:2011-05-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of SHP2 in complex with a tautomycetin analog TTN D-1
To be Published
1ZCK
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BU of 1zck by Molmil
native structure prl-1 (ptp4a1)
Descriptor: ACETIC ACID, protein tyrosine phosphatase 4a1
Authors:Sun, J.P, Wang, W.Q, Yang, H, Liu, S, Liang, F, Fedorov, A.A, Almo, S.C, Zhang, Z.Y.
Deposit date:2005-04-12
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Biochemical Properties of PRL-1, a Phosphatase Implicated in Cell Growth, Differentiation, and Tumor Invasion.
Biochemistry, 44, 2005
1ZCL
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BU of 1zcl by Molmil
prl-1 c104s mutant in complex with sulfate
Descriptor: SULFATE ION, protein tyrosine phosphatase 4a1
Authors:Sun, J.P, Wang, W.Q, Yang, H, Liu, S, Liang, F, Fedorov, A.A, Almo, S.C, Zhang, Z.Y.
Deposit date:2005-04-12
Release date:2005-09-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and Biochemical Properties of PRL-1, a Phosphatase Implicated in Cell Growth, Differentiation, and Tumor Invasion.
Biochemistry, 44, 2005
1ZLP
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BU of 1zlp by Molmil
Petal death protein PSR132 with cysteine-linked glutaraldehyde forming a thiohemiacetal adduct
Descriptor: 5-HYDROXYPENTANAL, MAGNESIUM ION, petal death protein
Authors:Teplyakov, A, Liu, S, Lu, Z, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-05-08
Release date:2006-01-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the Petal Death Protein from Carnation Flower.
Biochemistry, 44, 2005
3O5X
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BU of 3o5x by Molmil
Crystal structure of the oncogenic tyrosine phosphatase SHP2 complexed with a salicylic acid-based small molecule inhibitor
Descriptor: 3-{1-[3-(biphenyl-4-ylamino)-3-oxopropyl]-1H-1,2,3-triazol-4-yl}-6-hydroxy-1-methyl-2-phenyl-1H-indole-5-carboxylic acid, Tyrosine-protein phosphatase non-receptor type 11
Authors:Zhang, Z.-Y, Zhang, X, He, Y, Liu, S, Yu, Z, Jiang, Z, Yang, Z, Dong, Y, Nabinger, S.C, Wu, L, Gunawan, A.M, Wang, L, Chan, R.J.
Deposit date:2010-07-28
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Salicylic acid based small molecule inhibitor for the oncogenic Src homology-2 domain containing protein tyrosine phosphatase-2 (SHP2).
J.Med.Chem., 53, 2010

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