Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 292 results

2Q7W
DownloadVisualize
BU of 2q7w by Molmil
Structural Studies Reveals the Inactivation of E. coli L-aspartate aminotransferase (S)-4,5-amino-dihydro-2-thiophenecarboxylic acid (SADTA) via two mechanisms at pH 6.0
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID, Aspartate aminotransferase, ...
Authors:Liu, D, Pozharski, E, Lepore, B, Fu, M, Silverman, R.B, Petsko, G.A, Ringe, D.
Deposit date:2007-06-07
Release date:2007-09-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals "A Tale of Two Mechanisms".
Biochemistry, 46, 2007
2QB2
DownloadVisualize
BU of 2qb2 by Molmil
Structural Studies Reveal the Inactivation of E. coli L-aspartate aminotransferase by (s)-4,5-dihydro-2thiophenecarboylic acid (SADTA) via two mechanisms (at pH 7.0).
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID, Aspartate aminotransferase, ...
Authors:Liu, D, Pozharski, E, Lepore, B, Fu, M, Silverman, R.B, Petsko, G.A, Ringe, D.
Deposit date:2007-06-15
Release date:2007-12-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms".
Biochemistry, 46, 2007
8J2N
DownloadVisualize
BU of 8j2n by Molmil
Exopolysaccharide phosphotransferase CpsY in Mycobacterium tuberculosis
Descriptor: Exopolysaccharide phosphotransferase CpsY
Authors:Liu, D.F.
Deposit date:2023-04-14
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Exopolysaccharide phosphotransferase CpsY in Mycobacterium tuberculosis
To Be Published
8J73
DownloadVisualize
BU of 8j73 by Molmil
Methylcrotonoyl-CoA carboxylase core-Dimer
Descriptor: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-04-27
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Methylcrotonoyl-CoA carboxylase core-Dimer
To Be Published
1BNO
DownloadVisualize
BU of 1bno by Molmil
NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA POLYMERASE BETA
Authors:Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P.
Deposit date:1996-04-25
Release date:1996-12-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface.
Biochemistry, 35, 1996
1BNP
DownloadVisualize
BU of 1bnp by Molmil
NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, 55 STRUCTURES
Descriptor: DNA POLYMERASE BETA
Authors:Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P.
Deposit date:1996-04-25
Release date:1996-12-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface.
Biochemistry, 35, 1996
8J99
DownloadVisualize
BU of 8j99 by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCS-mcoa state
Descriptor: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, Methylcrotonoyl-CoA carboxylase subunit alpha, ...
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-05-02
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCS-mcoa state
To Be Published
8J4Z
DownloadVisualize
BU of 8j4z by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCCP-CTS state with substrate
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-04-21
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCCP-CTS state with substrate
To Be Published
8J7O
DownloadVisualize
BU of 8j7o by Molmil
Human pyruvate carboxylase in BCCP-CTS state without BC
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Pyruvate carboxylase, mitochondrial
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-04-27
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:Human pyruvate carboxylase
To Be Published
8J78
DownloadVisualize
BU of 8j78 by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H2 state
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-04-27
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCCP-H2 state
To Be Published
8J7D
DownloadVisualize
BU of 8j7d by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y.
Deposit date:2023-04-27
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state
To Be Published
8JAK
DownloadVisualize
BU of 8jak by Molmil
Human MCC in MCCU state
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y, Tian, X.Y.
Deposit date:2023-05-06
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Human MCC in BCCP-BCS state
To Be Published
8JAW
DownloadVisualize
BU of 8jaw by Molmil
Human MCC in MCCD state
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y, Tian, X.Y.
Deposit date:2023-05-07
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Human MCC in BCCP-CTS state
To Be Published
1YYB
DownloadVisualize
BU of 1yyb by Molmil
Solution structure of 1-26 fragment of human programmed cell death 5 protein
Descriptor: Programmed cell death protein 5
Authors:Liu, D.S, Feng, Y.G, Yao, H.W, Wang, J.F.
Deposit date:2005-02-24
Release date:2005-09-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The N-terminal 26-residue fragment of human programmed cell death 5 protein can form a stable alpha-helix having unique electrostatic potential character.
Biochem.J., 392, 2005
1RKN
DownloadVisualize
BU of 1rkn by Molmil
Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation
Descriptor: Thermonuclease
Authors:Liu, D.S, Feng, Y.G, Ye, K.Q, Shan, L, Wang, J.F.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92, 2007
2F3W
DownloadVisualize
BU of 2f3w by Molmil
solution structure of 1-110 fragment of staphylococcal nuclease in 2M TMAO
Descriptor: Thermonuclease
Authors:Liu, D, Xie, T, Feng, Y, Shan, L, Ye, K, Wang, J.
Deposit date:2005-11-22
Release date:2006-12-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92, 2007
1JR6
DownloadVisualize
BU of 1jr6 by Molmil
Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Helicase
Descriptor: Helicase NS3
Authors:Liu, D, Wyss, D.F, Wang, Y.S, Gesell, J.J.
Deposit date:2001-08-10
Release date:2002-08-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase.
J.Mol.Biol., 314, 2001
1OVQ
DownloadVisualize
BU of 1ovq by Molmil
Solution structure of the hypothetical protein YqgF from Escherichia coli
Descriptor: Hypothetical protein yqgF
Authors:Liu, D, Wang, Y.S, Wyss, D.F.
Deposit date:2003-03-27
Release date:2003-11-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical protein YqgF from Escherichia coli reveals an RNAse H fold.
J.Biomol.NMR, 27, 2003
8JXM
DownloadVisualize
BU of 8jxm by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H2 state with MCoA
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y, Tian, X.Y.
Deposit date:2023-06-30
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in
To Be Published
8JXL
DownloadVisualize
BU of 8jxl by Molmil
Human 3-methylcrotonyl-CoA carboxylase in MCCU state with MCoA
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y, Tian, X.Y.
Deposit date:2023-06-30
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCCP-BCS state with substrate
To Be Published
8JXN
DownloadVisualize
BU of 8jxn by Molmil
Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state with MCoA
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, ...
Authors:Liu, D.S, Su, J.Y, Tian, X.Y.
Deposit date:2023-06-30
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Human 3-methylcrotonyl-CoA carboxylase in BCCP-H1 state with substrate
To Be Published
1TBA
DownloadVisualize
BU of 1tba by Molmil
SOLUTION STRUCTURE OF A TBP-TAFII230 COMPLEX: PROTEIN MIMICRY OF THE MINOR GROOVE SURFACE OF THE TATA BOX UNWOUND BY TBP, NMR, 25 STRUCTURES
Descriptor: TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN, TRANSCRIPTION INITIATION FACTOR TFIID
Authors:Liu, D, Ishima, R, Tong, K.I, Bagby, S, Kokubo, T, Muhandiram, D.R, Kay, L.E, Nakatani, Y, Ikura, M.
Deposit date:1998-08-16
Release date:1999-08-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP.
Cell(Cambridge,Mass.), 94, 1998
4FZ3
DownloadVisualize
BU of 4fz3 by Molmil
Crystal structure of SIRT3 in complex with acetyl p53 peptide coupled with 4-amino-7-methylcoumarin
Descriptor: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, ZINC ION, ...
Authors:Liu, D, Wu, J, Zhang, D, Chen, K, Jiang, H, Liu, H.
Deposit date:2012-07-06
Release date:2013-03-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery and Mechanism Study of SIRT1 Activators that Promote the Deacetylation of Fluorophore-Labeled Substrate
J.Med.Chem., 56, 2013
1ONB
DownloadVisualize
BU of 1onb by Molmil
Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase
Descriptor: helicase NS3
Authors:Liu, D, Wang, Y.S, Gesell, J.J, Wyss, D.F.
Deposit date:2003-02-27
Release date:2003-03-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase
J.Mol.Biol., 314, 2001
1RQ8
DownloadVisualize
BU of 1rq8 by Molmil
Solution structure of the hypothetical protein SAV1595 from Staphylococcus aureus, a putative RNA binding protein
Descriptor: conserved hypothetical protein
Authors:Liu, D, Wyss, D.F.
Deposit date:2003-12-04
Release date:2004-07-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of the Hypothetical Protein SAV1595 from Staphylococcus Aureus, a Putative RNA Binding Protein.
J.Biomol.Nmr, 29, 2004

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon