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PDB: 918 results

4N4G
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Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha
Descriptor: PHOSPHATE ION, ZINC ION, Zinc finger MYND domain-containing protein 11
Authors:Li, Y, Ren, Y, Li, H.
Deposit date:2013-10-08
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.947 Å)
Cite:ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression
Nature, 508, 2014
4N4I
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Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.3K36me3
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Peptide from Histone H3.3, ...
Authors:Li, Y, Ren, Y, Li, H.
Deposit date:2013-10-08
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression
Nature, 508, 2014
4N4H
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BU of 4n4h by Molmil
Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.1K36me3
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Peptide from Histone H3.1, ...
Authors:Li, Y, Ren, Y, Li, H.
Deposit date:2013-10-08
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression
Nature, 508, 2014
5J9S
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BU of 5j9s by Molmil
ENL YEATS in complex with histone H3 acetylation at K27
Descriptor: H3K27ac peptide from Histone H3.1, Protein ENL, SULFATE ION
Authors:Li, Y, Li, H.
Deposit date:2016-04-11
Release date:2017-03-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia
Nature, 543, 2017
5FNA
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BU of 5fna by Molmil
Cryo-EM reconstruction of caspase-1 CARD
Descriptor: Caspase-1
Authors:Li, Y, Lu, A, Schmidt, F.I, Yin, Q, Chen, S, Fu, T.M, Tong, A.B, Ploegh, H.L, Mao, Y, Wu, H.
Deposit date:2015-11-11
Release date:2016-03-30
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Molecular Basis of Caspase-1 Polymerization and its Inhibition by a Novel Capping Mechanism
Nat.Struct.Mol.Biol., 23, 2016
2QM4
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BU of 2qm4 by Molmil
Crystal structure of human XLF/Cernunnos, a non-homologous end-joining factor
Descriptor: Non-homologous end-joining factor 1
Authors:Li, Y, Chirgadze, D.Y, Sibanda, B.L, Bolanos-Garcia, V.M, Davies, O.R, Blundell, T.L.
Deposit date:2007-07-14
Release date:2007-12-11
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human XLF/Cernunnos reveals unexpected differences from XRCC4 with implications for NHEJ.
Embo J., 27, 2008
3KEA
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BU of 3kea by Molmil
Structure function studies of vaccinia virus host-range protein K1 reveal a novel ankyrin repeat interaction surface for K1s function
Descriptor: K1L
Authors:Li, Y.
Deposit date:2009-10-25
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure function studies of vaccinia virus host range protein k1 reveal a novel functional surface for ankyrin repeat proteins.
J.Virol., 84, 2010
4N4Y
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BU of 4n4y by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
Authors:Li, Y, Chen, Y, Stout, C.D.
Deposit date:2013-10-08
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
To be Published
1WPA
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BU of 1wpa by Molmil
1.5 Angstrom crystal structure of human occludin fragment 413-522
Descriptor: Occludin
Authors:Li, Y, Lavie, A, Fanning, A.S, Anderson, J.M.
Deposit date:2004-09-01
Release date:2005-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface.
J.Mol.Biol., 352, 2005
4XVJ
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STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE BROADLY NEUTRALIZING ANTIBODY HC33.1
Descriptor: HCV E2 antigen, antibody heavy chain variable domain, antibody light chain variable domain
Authors:Li, Y, Mariuzza, R.A.
Deposit date:2015-01-27
Release date:2015-03-11
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for penetration of the glycan shield of hepatitis C virus e2 glycoprotein by a broadly neutralizing human antibody.
J.Biol.Chem., 290, 2015
7YTD
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BU of 7ytd by Molmil
Cryo-EM structure of four human FcmR bound to IgM-Fc/J
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, Immunoglobulin J chain, ...
Authors:Li, Y, Shen, H, Xiao, J.
Deposit date:2022-08-14
Release date:2023-02-01
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Immunoglobulin M perception by Fc mu R.
Nature, 615, 2023
7YSG
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BU of 7ysg by Molmil
Cryo-EM structure of human FcmR bound to sIgM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, ...
Authors:Li, Y, Shen, H, Xiao, J.
Deposit date:2022-08-12
Release date:2023-02-01
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Immunoglobulin M perception by Fc mu R.
Nature, 615, 2023
7YTC
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BU of 7ytc by Molmil
Cryo-EM structure of human FcmR bound to IgM-Fc/J
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, Immunoglobulin J chain, ...
Authors:Li, Y, Shen, H, Xiao, J.
Deposit date:2022-08-14
Release date:2023-02-01
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Immunoglobulin M perception by Fc mu R.
Nature, 615, 2023
7YTE
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BU of 7yte by Molmil
crystal structure of human FcmR-D1 bound to IgM C4-domain
Descriptor: Fas apoptotic inhibitory molecule 3, Ig mu chain C region secreted form
Authors:Li, Y, Shen, H, Xiao, J.
Deposit date:2022-08-14
Release date:2023-02-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Immunoglobulin M perception by Fc mu R.
Nature, 615, 2023
8W8F
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BU of 8w8f by Molmil
human co-transcriptional RNA capping enzyme RNGTT-CMTR1
Descriptor: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (36-MER), DNA (45-MER), ...
Authors:Li, Y, Wang, Q, Xu, Y, Li, Z.
Deposit date:2023-09-02
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Strcutures of co-transcriptional RNA capping enzymes on paused transcription complex
To Be Published
8W8E
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BU of 8w8e by Molmil
human co-transcriptional RNA capping enzyme RNGTT
Descriptor: DNA (36-MER), DNA (45-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Li, Y, Wang, Q, Xu, Y, Li, Z.
Deposit date:2023-09-02
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Strcutures of co-transcriptional RNA capping enzymes on paused transcription complex
To Be Published
3L2O
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BU of 3l2o by Molmil
Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase
Descriptor: F-box only protein 4, S-phase kinase-associated protein 1
Authors:Li, Y, Hao, B.
Deposit date:2009-12-15
Release date:2010-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of dimerization-dependent ubiquitination by the SCF(Fbx4) ubiquitin ligase.
J.Biol.Chem., 285, 2010
3KTQ
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BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
1HQR
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BU of 1hqr by Molmil
CRYSTAL STRUCTURE OF A SUPERANTIGEN BOUND TO THE HIGH-AFFINITY, ZINC-DEPENDENT SITE ON MHC CLASS II
Descriptor: HLA-DR ALPHA CHAIN, HLA-DR BETA CHAIN, MYELIN BASIC PROTEIN, ...
Authors:Li, Y, Li, H, Dimasi, N, Schlievert, P, Mariuzza, R.
Deposit date:2000-12-19
Release date:2001-01-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a superantigen bound to the high-affinity, zinc-dependent site on MHC class II.
Immunity, 14, 2001
8XAB
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BU of 8xab by Molmil
Crystal structure of Ubl1 domain of nonstructural protein 3 of SARS-CoV-2
Descriptor: GLYCEROL, Papain-like protease nsp3
Authors:Li, Y, Ke, Z.
Deposit date:2023-12-03
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:N-terminus of SARS-CoV-2 Nsp3 Interrupts RNA-driven Phase Separation of N Protein by Displacing RNA
To Be Published
6L5Z
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BU of 6l5z by Molmil
Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor
Descriptor: Protein AF-9, SC0-ALO-ALA-SC3-SC4-NH2
Authors:Li, Y, Chen, G, Li, H.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation.
J.Am.Chem.Soc., 142, 2020
7BV6
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BU of 7bv6 by Molmil
Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex
Descriptor: Synaptosomal-associated protein 29, Syntaxin-17, Vesicle-associated membrane protein 8
Authors:Li, Y, Pan, L.F.
Deposit date:2020-04-09
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Decoding three distinct states of the Syntaxin17 SNARE motif in mediating autophagosome-lysosome fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020
7BV4
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BU of 7bv4 by Molmil
Crystal structure of STX17 LIR region in complex with GABARAP
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Gamma-aminobutyric acid receptor-associated protein, ...
Authors:Li, Y, Pan, L.F.
Deposit date:2020-04-09
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Decoding three distinct states of the Syntaxin17 SNARE motif in mediating autophagosome-lysosome fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KXS
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BU of 6kxs by Molmil
Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pIgR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin J chain, ...
Authors:Li, Y, Wang, G, Xiao, J.
Deposit date:2019-09-12
Release date:2020-02-05
Last modified:2021-12-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into immunoglobulin M.
Science, 367, 2020
5F59
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BU of 5f59 by Molmil
The crystal structure of MLL3 SET domain
Descriptor: Histone-lysine N-methyltransferase 2C, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-04
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016

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