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PDB: 251 results

4QXZ
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Crystal structure of a hypothetical protein from Staphylococcus aureus
Descriptor: Uncharacterized protein
Authors:Lee, B.-J, Lee, S.J, Lee, K.-Y.
Deposit date:2014-07-23
Release date:2015-06-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of YwpF from Staphylococcus aureus reveals its architecture comprised of a beta-barrel core domain resembling type VI secretion system proteins and a two-helix pair.
Proteins, 83, 2015
4RSS
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BU of 4rss by Molmil
Crystal structure of tyrosine-protein kinase SYK with an inhibitor
Descriptor: 1-[(3-methyl-1-{2-[(1,2,3-trimethyl-1H-indol-5-yl)amino]pyrimidin-4-yl}-1H-pyrazol-4-yl)methyl]azetidin-3-ol, Tyrosine-protein kinase SYK
Authors:Lee, B.I, Lee, S.J, Choi, J.-S.
Deposit date:2014-11-11
Release date:2015-10-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Highly potent and selective pyrazolylpyrimidines as Syk kinase inhibitors.
Bioorg.Med.Chem.Lett., 25, 2015
4XGQ
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BU of 4xgq by Molmil
Crystal structure of addiction module from Mycobacterial species
Descriptor: Antitoxin VapB30, MAGNESIUM ION, Ribonuclease VapC30
Authors:Lee, B.-J, Lee, I.-G, Lee, S.J.
Deposit date:2015-01-02
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional studies of the Mycobacterium tuberculosis VapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides
Nucleic Acids Res., 43, 2015
4XGR
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BU of 4xgr by Molmil
Crystal structure of addiction module from Mycobacterial species
Descriptor: Antitoxin VapB30, MAGNESIUM ION, Ribonuclease VapC30
Authors:Lee, B.-J, Lee, I.-G, Lee, S.J.
Deposit date:2015-01-02
Release date:2015-08-12
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional studies of the Mycobacterium tuberculosis VapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides
Nucleic Acids Res., 43, 2015
6ZZ6
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BU of 6zz6 by Molmil
Cryo-EM structure of S.cerevisiae cohesin-Scc2-DNA complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (34-MER), MAGNESIUM ION, ...
Authors:Lee, B.-G, Gonzalez Llamazares, A, Collier, J, Nasmyth, K.A, Lowe, J.
Deposit date:2020-08-04
Release date:2020-09-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Transport of DNA within cohesin involves clamping on top of engaged heads by Scc2 and entrapment within the ring by Scc3.
Elife, 9, 2020
4Z1D
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BU of 4z1d by Molmil
Structure of PEP and zinc bound KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHOENOLPYRUVATE, ZINC ION
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1C
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BU of 4z1c by Molmil
Structure of Cadmium bound KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1A
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BU of 4z1a by Molmil
Structure of apo form KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
4Z1B
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BU of 4z1b by Molmil
Structure of H204A mutant KDO8PS from H.pylori
Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase
Authors:Lee, B.J, Cho, S, Im, H, Yoon, H.J.
Deposit date:2015-03-27
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS).
Eur.J.Med.Chem., 108, 2016
6YVV
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BU of 6yvv by Molmil
Condensin complex from S.cerevisiae ATP-free apo bridged state
Descriptor: Condensin complex subunit 1,Ycs4, Condensin complex subunit 2,Brn1, Structural maintenance of chromosomes protein 2,Structural maintenance of chromosomes protein 2, ...
Authors:Lee, B.-G, Cawood, C, Gutierrez-Escribano, P, Nakane, T, Merkel, F, Hassler, M, Haering, C.H, Aragon, L, Lowe, J.
Deposit date:2020-04-28
Release date:2020-07-15
Last modified:2020-08-19
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism.
Nat.Struct.Mol.Biol., 27, 2020
6YVU
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BU of 6yvu by Molmil
Condensin complex from S.cerevisiae ATP-free apo non-engaged state
Descriptor: Condensin complex subunit 1,Condensin complex subunit 1,Ycs4, Condensin complex subunit 2,Condensin complex subunit 2,Brn1, Structural maintenance of chromosomes protein 2,Structural maintenance of chromosomes protein 2,Smc2, ...
Authors:Lee, B.-G, Cawood, C, Gutierrez-Escribano, P, Nakane, T, Merkel, F, Hassler, M, Aragon, L, Haering, C.H, Lowe, J.
Deposit date:2020-04-28
Release date:2020-07-15
Last modified:2020-08-19
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism.
Nat.Struct.Mol.Biol., 27, 2020
7OGT
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BU of 7ogt by Molmil
Folded elbow of cohesin
Descriptor: Structural maintenance of chromosomes protein 1, Structural maintenance of chromosomes protein 3
Authors:Lee, B.-G, Gonzalez Llamazares, A, Collier, J, Patele, N.J, Nasmyth, K.A, Lowe, J.
Deposit date:2021-05-07
Release date:2021-07-28
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.
Elife, 10, 2021
7P81
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BU of 7p81 by Molmil
Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state)
Descriptor: ADEP2, ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-06-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
7P80
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BU of 7p80 by Molmil
Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state)
Descriptor: ADEP2, ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-06-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
7Q2Y
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BU of 7q2y by Molmil
Cryo-EM structure of clamped S.cerevisiae condensin-DNA complex (form II)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Condensin complex subunit 1, ...
Authors:Lee, B.-G, Rhodes, J, Lowe, J.
Deposit date:2021-10-26
Release date:2022-03-23
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Clamping of DNA shuts the condensin neck gate.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Q2X
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BU of 7q2x by Molmil
Cryo-EM structure of clamped S.cerevisiae condensin-DNA complex (Form I)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Condensin complex subunit 1, ...
Authors:Lee, B.-G, Rhodes, J, Lowe, J.
Deposit date:2021-10-26
Release date:2022-03-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Clamping of DNA shuts the condensin neck gate.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Q2Z
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BU of 7q2z by Molmil
Cryo-EM structure of S.cerevisiae condensin Ycg1-Brn1-DNA complex
Descriptor: Condensin complex subunit 2, Condensin complex subunit 3, DNA
Authors:Lee, B.-G, Rhodes, J, Lowe, J.
Deposit date:2021-10-26
Release date:2022-04-06
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Clamping of DNA shuts the condensin neck gate.
Proc.Natl.Acad.Sci.USA, 119, 2022
4UF7
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BU of 4uf7 by Molmil
Ghanaian henipavirus (Gh-M74a) attachment glycoprotein in complex with human ephrinB2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CHLORIDE ION, ...
Authors:Lee, B, Pernet, O, Ahmed, A.A, Zeltina, A, Beaty, S.M, Bowden, T.A.
Deposit date:2015-03-13
Release date:2015-04-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Recognition of Human Ephrinb2 Cell Surface Receptor by an Emergent African Henipavirus.
Proc.Natl.Acad.Sci.USA, 112, 2015
4QJN
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BU of 4qjn by Molmil
Crystal structure of apo nucleoid associated protein, SAV1473
Descriptor: DNA-binding protein HU
Authors:Lee, B.-J, Kim, D.-H, Im, H, Yoon, H.-J.
Deposit date:2014-06-04
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.613 Å)
Cite:beta-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanism
Acta Crystallogr.,Sect.D, 70, 2014
4QJU
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BU of 4qju by Molmil
Crystal structure of DNA-bound nucleoid associated protein, SAV1473
Descriptor: DNA (5'-D(*TP*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*CP*C)-3'), DNA-binding protein HU
Authors:Lee, B.-J, Kim, D.-H, Im, H, Yoon, H.-J.
Deposit date:2014-06-04
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:beta-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanism
Acta Crystallogr.,Sect.D, 70, 2014
5JV4
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BU of 5jv4 by Molmil
Structure of F420 binding protein, MSMEG_6526, from Mycobacterium smegmatis with F420 bound
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, COENZYME F420, ...
Authors:Lee, B.M, Carr, P.D, Jackson, C.J.
Deposit date:2016-05-10
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of F420 binding protein, MSMEG_6526, from Mycobacterium smegmatis with F420 bound
To Be Published
7VHV
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BU of 7vhv by Molmil
Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION
Authors:Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J.
Deposit date:2021-09-23
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.
Acta Crystallogr D Struct Biol, 78, 2022
8CTV
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BU of 8ctv by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) -Tl+ complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, SODIUM ION, ...
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
8CTT
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BU of 8ctt by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) at 100K
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, POTASSIUM ION, Potassium channel protein
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
3CNK
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BU of 3cnk by Molmil
Crystal Structure of the dimerization domain of human filamin A
Descriptor: Filamin-A, SULFATE ION
Authors:Lee, B.J, Seo, M.D, Seok, S.H, Lee, S.J, Kwon, A.R, Im, H.
Deposit date:2008-03-26
Release date:2009-02-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the dimerization domain of human filamin A
Proteins, 75, 2008

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