PDB Search results for query - Protein Data Bank Japan

PDB: 51 results

SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 3 Bound to P2B-2F6 Fab
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, P2B-2F6 Fab heavy chain, P2B-2F6 Fab light chain, ...
Authors:	Dickey, T.D, Tolia, N.H.
Deposit date:	2022-06-16
Release date:	2022-07-06
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Design of the SARS-CoV-2 RBD vaccine antigen improves neutralizing antibody response. Sci Adv, 8, 2022

7NAZ

TPR-rich domain of EccA3 from M. smegmatis
Descriptor:	1,4-DIETHYLENE DIOXIDE, ESX-3 secretion system protein EccA3, GLYCEROL, ...
Authors:	Crosskey, T.D, Wilmanns, M.
Deposit date:	2021-01-25
Release date:	2022-03-02
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structure of TPR-rich domain of M. smegmatis EccA3 To Be Published

3ALU

Crystal structure of CEL-IV complexed with Raffinose
Descriptor:	1,2-ETHANEDIOL, CALCIUM ION, Lectin CEL-IV, ...
Authors:	Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:	2010-08-07
Release date:	2011-01-19
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif J.Biol.Chem., 286, 2011

2Z48

Crystal Structure of Hemolytic Lectin CEL-III Complexed with GalNac
Descriptor:	2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, ...
Authors:	Hatakeyama, T, Unno, H, Eto, S, Hidemura, H, Uchida, T, Kouzuma, Y.
Deposit date:	2007-06-13
Release date:	2007-10-30
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	C-type lectin-like carbohydrate-recognition of the hemolytic lectin CEL-III containing ricin-type beta-trefoil folds J.Biol.Chem., 282, 2007

3ALT

Crystal structure of CEL-IV complexed with Melibiose
Descriptor:	CALCIUM ION, Lectin CEL-IV, C-type, ...
Authors:	Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:	2010-08-07
Release date:	2011-01-19
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif J.Biol.Chem., 286, 2011

3ALS

Crystal structure of CEL-IV
Descriptor:	CALCIUM ION, Lectin CEL-IV, C-type
Authors:	Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:	2010-08-07
Release date:	2011-01-19
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif J.Biol.Chem., 286, 2011

2Z49

Crystal Structure of Hemolytic Lectin CEL-III Complexed with methyl-alpha-D-galactopylanoside
Descriptor:	CALCIUM ION, Hemolytic lectin CEL-III, MAGNESIUM ION, ...
Authors:	Hatakeyama, T, Unno, H, Eto, S, Hidemura, H, Uchida, T, Kouzuma, Y.
Deposit date:	2007-06-13
Release date:	2007-10-30
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	C-type lectin-like carbohydrate-recognition of the hemolytic lectin CEL-III containing ricin-type beta-trefoil folds J.Biol.Chem., 282, 2007

2N9K

1H, 13C, and 15N Chemical Shift Assignments for in vitro GB1
Descriptor:	Immunoglobulin G-binding protein G
Authors:	Ikeya, T, Hanashima, T, Hosoya, S, Shimazaki, M, Ikeda, S, Mishima, M, Guentert, P, Ito, Y.
Deposit date:	2015-11-26
Release date:	2016-12-28
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Improved in-cell structure determination of proteins at near-physiological concentration Sci Rep, 6, 2016

2N9L

1H, 13C, and 15N Chemical Shift Assignments for in-cell GB1
Descriptor:	Immunoglobulin G-binding protein G
Authors:	Ikeya, T, Hanashima, T, Hosoya, S, Shimazaki, M, Ikeda, S, Mishima, M, Guentert, P, Ito, Y.
Deposit date:	2015-11-30
Release date:	2016-12-28
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Improved in-cell structure determination of proteins at near-physiological concentration Sci Rep, 6, 2016

4HJ8

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGCT)
Descriptor:	DNA (5'-D(GPGPTPTPAPCPGPCP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-12
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.043 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HID

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GCTTACGGT)
Descriptor:	DNA (5'-D(GPCPTPTPAPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-11
Release date:	2012-12-12
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.822 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HJA

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (ACGGTTACGGT)
Descriptor:	DNA (5'-D(APCPGPGPTPTPAPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-12
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HJ7

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTAGGGT)
Descriptor:	DNA (5'-D(GPGPTPTPAPGPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-12
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (1.783 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HIO

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTAACGGT)
Descriptor:	DNA (5'-D(GPGPTPAPAPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, McKercher, M.A, Wuttke, D.S.
Deposit date:	2012-10-11
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (1.753 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HIK

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGGT)
Descriptor:	DNA (5'-D(GPGPTPTPAPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-11
Release date:	2012-12-12
Last modified:	2017-11-15
Method:	X-RAY DIFFRACTION (1.636 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HJ5

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTTCGGT)
Descriptor:	DNA (5'-D(GPGPTPTPTPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-12
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.04 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HJ9

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (CGGTTACGGT)
Descriptor:	DNA (5'-D(CPGPGPTPTPAPCPGPGPT)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-12
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

4HIM

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGATACGGT)
Descriptor:	DNA (5'-D(GPGPAPTPAPCPGPGP*T)-3'), Protection of telomeres protein 1
Authors:	Dickey, T.H, Wuttke, D.S.
Deposit date:	2012-10-11
Release date:	2012-12-12
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes. Structure, 21, 2013

3JZ4

Crystal structure of E. coli NADP dependent enzyme
Descriptor:	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Succinate-semialdehyde dehydrogenase [NADP+]
Authors:	Langendorf, C.G, Key, T.L.G, Fenalti, G, Kan, W.T, Buckle, A.M, Caradoc-Davies, T, Tuck, K.L, Law, R.H.P, Whisstock, J.C.
Deposit date:	2009-09-22
Release date:	2010-03-16
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions. Plos One, 5, 2010

3VP6

Structural characterization of Glutamic Acid Decarboxylase; insights into the mechanism of autoinactivation
Descriptor:	4-oxo-4H-pyran-2,6-dicarboxylic acid, GLYCEROL, Glutamate decarboxylase 1
Authors:	Langendorf, C.G, Tuck, K.L, Key, T.L.G, Rosado, C.J, Wong, A.S.M, Fenalti, G, Buckle, A.M, Law, R.H.P, Whisstock, J.C.
Deposit date:	2012-02-27
Release date:	2013-01-16
Last modified:	2013-08-14
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structural characterization of the mechanism through which human glutamic acid decarboxylase auto-activates Biosci.Rep., 33, 2013

1VCL

Crystal Structure of Hemolytic Lectin CEL-III
Descriptor:	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:	Uchida, T, Yamasaki, T, Eto, S, Sugawara, H, Kurisu, G, Nakagawa, A, Kusunoki, M, Hatakeyama, T.
Deposit date:	2004-03-09
Release date:	2004-09-07
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal Structure of the Hemolytic Lectin CEL-III Isolated from the Marine Invertebrate Cucumaria echinata: IMPLICATIONS OF DOMAIN STRUCTURE FOR ITS MEMBRANE PORE-FORMATION MECHANISM J.Biol.Chem., 279, 2004

2LX0

Arced helix (ArcH) NMR structure of the reovirus p14 fusion-associated small transmembrane (FAST) protein transmembrane domain (TMD) in dodecyl phosphocholine (DPC) micelles
Descriptor:	Membrane fusion protein p14
Authors:	Sarker, M, Key, T, Duncan, R, Rainey, J.K.
Deposit date:	2012-08-10
Release date:	2012-09-05
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	A Cell-Cell Membrane Fusion Module Comprising a Transmembrane Arced Helix (ArcH) To be Published

8AU4

Structural insights reveal a heterotetramer between oncogenic K-Ras4BG12V and Rgl2, a RalA/B activator
Descriptor:	Ral guanine nucleotide dissociation stimulator-like 2
Authors:	Tariq, M, Ikeya, T, Togashi, N, Fairall, L, Alejo, C.B, Kamei, S, Alonso, B.R, Campillo, M.A.M, Hudson, A, Ito, Y, Schwabe, J, Dominguez, C, Tanaka, K.
Deposit date:	2022-08-25
Release date:	2023-08-23
Last modified:	2023-10-25
Method:	SOLUTION NMR
Cite:	Structural insights into the complex of oncogenic KRas4B G12V and Rgl2, a RalA/B activator. Life Sci Alliance, 7, 2024

8JEB

Crystal structure of CGL1 from Crassostrea gigas, mannotetraose-bound form (CGL1/Man(alpha)1-2Man(alpha)1-2Man(alpha)1-6Man)
Descriptor:	ACETIC ACID, MAGNESIUM ION, Natterin-3, ...
Authors:	Unno, H, Hatakeyama, T.
Deposit date:	2023-05-15
Release date:	2023-10-25
Last modified:	2024-01-17
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem., 175, 2023

8JEA

Crystal structure of CGL1 from Crassostrea gigas, mannotriose-bound form (CGL1/Man(alpha)1-2Man(alpha)1-2Man)
Descriptor:	ACETIC ACID, CACODYLATE ION, MAGNESIUM ION, ...
Authors:	Unno, H, Hatakeyama, T.
Deposit date:	2023-05-15
Release date:	2023-10-25
Last modified:	2024-01-17
Method:	X-RAY DIFFRACTION (0.97 Å)
Cite:	Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem., 175, 2023

12 3 >

Total results:	51
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Key, T"