Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 20 results

4FQE
DownloadVisualize
BU of 4fqe by Molmil
KdgM porin
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, N-OCTANE, Oligogalacturonate-specific porin kdgM
Authors:Hutter, C, Peneff, C.M, Wirth, C, Schirmer, T.
Deposit date:2012-06-25
Release date:2013-06-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure of the oligogalacturonate-specific KdgM porin.
Acta Crystallogr.,Sect.D, 70, 2014
4PR7
DownloadVisualize
BU of 4pr7 by Molmil
KdgM porin in complex with disordered oligogalacturonate
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, N-OCTANE, Oligogalacturonate-specific porin KdgM, ...
Authors:Hutter, C, Peneff, C.M, Wirth, C, Schirmer, T.
Deposit date:2014-03-05
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the oligogalacturonate-specific KdgM porin.
Acta Crystallogr.,Sect.D, 70, 2014
6QV2
DownloadVisualize
BU of 6qv2 by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with nanobody Nb_TM#2
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (4.23 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QV1
DownloadVisualize
BU of 6qv1 by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with nanobody Nb_TM1
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.48 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QUZ
DownloadVisualize
BU of 6quz by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with sybody Sb_TM35
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QV0
DownloadVisualize
BU of 6qv0 by Molmil
Structure of ATP-bound outward-facing TM287/288 in complex with sybody Sb_TM35
Descriptor: ABC transporter, ATP-binding protein, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6LZ2
DownloadVisualize
BU of 6lz2 by Molmil
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ...
Authors:Cai, H, Yao, H, Li, T, Hutter, C, Tang, Y, Li, Y, Seeger, M, Li, D.
Deposit date:2020-02-17
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification.
Commun Biol, 3, 2020
8PNL
DownloadVisualize
BU of 8pnl by Molmil
Outward-open conformation of a Major Facilitator Superfamily (MFS) transporter MHAS2168, a homologue of Rv1410 from M. tuberculosis, in complex with an alpaca nanobody
Descriptor: Nb_H2, Putative triacylglyceride transporter
Authors:Remm, S, Schoeppe, J, Hutter, C.A.J, Gonda, I, Seeger, M.A.
Deposit date:2023-06-30
Release date:2023-10-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for triacylglyceride extraction from mycobacterial inner membrane by MFS transporter Rv1410.
Nat Commun, 14, 2023
7OCY
DownloadVisualize
BU of 7ocy by Molmil
Enterococcus faecalis EfrCD in complex with a nanobody
Descriptor: ABC transporter ATP-binding protein, Nanobody
Authors:Ehrenbolger, K, Hutter, C.A.J, Meier, G, Seeger, M.A, Barandun, J.
Deposit date:2021-04-28
Release date:2022-05-18
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (4.25 Å)
Cite:Deep mutational scan of a drug efflux pump reveals its structure-function landscape.
Nat.Chem.Biol., 19, 2023
6TEK
DownloadVisualize
BU of 6tek by Molmil
Structure of siderophore interaction domain of IrtAB
Descriptor: Drug ABC transporter ATP-binding protein, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Arnold, F.M, Gonda, I, Hutter, C.A.J, Seeger, M.A, Hurlimann, L.M.
Deposit date:2019-11-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The ABC exporter IrtAB imports and reduces mycobacterial siderophores.
Nature, 580, 2020
6TEJ
DownloadVisualize
BU of 6tej by Molmil
Structure of apo IrtAB devoid SID in complex with sybody Syb_NL5
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, Drug ABC transporter ATP-binding protein, NICKEL (II) ION, ...
Authors:Gonda, I, Arnold, F.M, Hutter, C.A.J, Weber, M.S, Seeger, M.A, Hurlimann, L.M.
Deposit date:2019-11-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The ABC exporter IrtAB imports and reduces mycobacterial siderophores.
Nature, 580, 2020
5OH6
DownloadVisualize
BU of 5oh6 by Molmil
Legionella pneumophila RidL N-terminal domain lacking beta hairpin
Descriptor: Interaptin
Authors:Baerlocher, K, Hutter, C.A.J, Swart, A.L, Steiner, B, Welin, A, Hohl, M, Letourneur, F, Seeger, M.A, Hilbi, H.
Deposit date:2017-07-14
Release date:2017-11-22
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5.
Nat Commun, 8, 2017
7CZ0
DownloadVisualize
BU of 7cz0 by Molmil
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb92)
Descriptor: ACETATE ION, CACODYLATE ION, CACODYLIC ACID, ...
Authors:Cai, H, Yao, H, Li, T, Hutter, C, Tang, Y, Li, Y, Seeger, M, Li, D.
Deposit date:2020-09-06
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:An improved fluorescent protein tag and its nanobodies for membrane protein expression, stability assay, and purification
To Be Published
5OH5
DownloadVisualize
BU of 5oh5 by Molmil
Legionella pneumophila RidL N-terminal retromer binding domain
Descriptor: RidL
Authors:Baerlocher, K, Hutter, C.A.J, Swart, A.L, Steiner, B, Welin, A, Hohl, M, Letourneur, F, Seeger, M.A, Hilbi, H.
Deposit date:2017-07-14
Release date:2017-11-22
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5.
Nat Commun, 8, 2017
7P7A
DownloadVisualize
BU of 7p7a by Molmil
SARS-CoV-2 spike protein in complex with sybody#68 in a 2up/1flexible conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (4.76 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
7P77
DownloadVisualize
BU of 7p77 by Molmil
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
7P78
DownloadVisualize
BU of 7p78 by Molmil
SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 1up/1up-out/1down conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
7P79
DownloadVisualize
BU of 7p79 by Molmil
SARS-CoV-2 spike protein in complex with sybodyb#15 in a 1up/1up-out/1down conformation.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
7P7B
DownloadVisualize
BU of 7p7b by Molmil
SARS-CoV-2 spike protein in complex with sybody no68 in a 1up/2down conformation
Descriptor: Spike glycoprotein
Authors:Walter, J.D, Hutter, C.A.J, Garaeva, A.A, Scherer, M, Zimmermann, I, Wyss, M, Rheinberger, J, Ruedin, Y, Earp, J.C, Egloff, P, Sorgenfrei, M, Huerlimann, L.M, Gonda, I, Meier, G, Remm, S, Thavarasah, S, Zimmer, G, Slotboom, D.J, Paulino, C, Plattet, P, Seeger, M.A.
Deposit date:2021-07-19
Release date:2021-08-04
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance.
Embo Rep., 23, 2022
6SY9
DownloadVisualize
BU of 6sy9 by Molmil
Structure of the Legionella pneumophila response regulator LqsR
Descriptor: Response regulator
Authors:Hochstrasser, R, Hutter, C.A.J, Arnold, F.M, Baerlocher, K, Seeger, M.A, Hilbi, H.
Deposit date:2019-09-27
Release date:2020-02-05
Last modified:2020-07-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the Legionella response regulator LqsR reveals amino acids critical for phosphorylation and dimerization.
Mol.Microbiol., 113, 2020

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon