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PDB: 58 results

6NSN
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BU of 6nsn by Molmil
TetR family transcriptional regulator CifR C99T-C181R Cysteines mutant complexed with 26bp double-strand operator DNA
Descriptor: DNA (26-MER), TetR family transcriptional regulator CifR
Authors:He, S, Madden, D.R.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa
Biorxiv, 2024
6NSM
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BU of 6nsm by Molmil
TetR family transcriptional regulator CifR C99T-C107S-C181R Cysteines mutant complexed with 26bp double-strand operator DNA
Descriptor: DNA (26-MER), TetR family transcriptional regulator CifR
Authors:He, S, Madden, D.R.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa
Biorxiv, 2024
6NSR
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BU of 6nsr by Molmil
TetR family transcriptional regulator CifR C99T-C181R cysteine mutant complexed with 26bp double-strand operator DNA and apo-CifR C99T-C181R
Descriptor: DNA (26-MER), TetR family transcriptional regulator CifR
Authors:He, S, Taher, N.M, Madden, D.R.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa
Biorxiv, 2024
4OG5
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BU of 4og5 by Molmil
Human menin with bound inhibitor MIV-5
Descriptor: 4-(3-{4-[(S)-cyclopentyl(hydroxy)pyridin-2-ylmethyl]piperidin-1-yl}propoxy)benzonitrile, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OG4
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BU of 4og4 by Molmil
Human menin with bound inhibitor MIV-3S
Descriptor: 4-(3-{4-[(S)-cyclopentyl(hydroxy)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OG7
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BU of 4og7 by Molmil
Human menin with bound inhibitor MIV-7
Descriptor: 4-(3-{4-[(S)-cyclopentyl(hydroxy)pyridin-2-ylmethyl]piperidin-1-yl}propoxy)benzenesulfonamide, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OG8
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BU of 4og8 by Molmil
Human menin with bound inhibitor MIV-6R
Descriptor: 2-PHOSPHOGLYCOLIC ACID, 4-(3-{4-[(R)-amino(cyclopentyl)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OG3
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BU of 4og3 by Molmil
Human menin with bound inhibitor MIV-3R
Descriptor: 4-(3-{4-[(R)-cyclopentyl(hydroxy)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OG6
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BU of 4og6 by Molmil
Human menin with bound inhibitor MIV-4
Descriptor: 4-(3-{4-[(R)-cyclopentyl(3-fluorophenyl)hydroxymethyl]piperidin-1-yl}propoxy)benzonitrile, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
8K76
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BU of 8k76 by Molmil
Crystal structure of S-adenosylmethionine-dependent methyltransferase from Fusobacterium nucleatum
Descriptor: S-adenosylmethionine-dependent methyltransferase
Authors:He, S.R, Bai, X, Zhang, J, Zhao, Z.D.
Deposit date:2023-07-26
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of S-adenosylmethionine-dependent methyltransferase from Fusobacterium nucleatum
To Be Published
8K5L
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BU of 8k5l by Molmil
Structure of tRNA (cmo5U34)-methyltransferase from Fusobacterium nucleatum
Descriptor: tRNA (cmo5U34)-methyltransferase
Authors:He, S.R, Bai, X.
Deposit date:2023-07-22
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal Structure of CmoA from Fusobacterium nucleatum
To Be Published
8K1F
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BU of 8k1f by Molmil
Crystal Structure of TrmR from Fusobacterium nucleatum
Descriptor: tRNA 5-hydroxyuridine methyltransferase
Authors:He, S.R, Bai, X, Zhang, J, Zhao, Z.D.
Deposit date:2023-07-10
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of TrmR from Fusobacterium nucleatum
To Be Published
8K1C
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BU of 8k1c by Molmil
Structural insight into the role of acetyl-CoA acetyltransferase from Fusobacterium nucleatum
Descriptor: Acetyl-CoA acetyltransferase
Authors:He, S.R, Bai, X, Zhang, J, Zhao, Z.D.
Deposit date:2023-07-10
Release date:2023-08-02
Method:X-RAY DIFFRACTION (1.894 Å)
Cite:Structural insight into the role of acetyl-CoA acetyltransferase from Fusobacterium nucleatum
To Be Published
7YGF
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BU of 7ygf by Molmil
Crystal structure of YggS from Fusobacterium nucleatum
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:He, S.R, Chan, Y.Y, Wang, L.L, Bai, X, Bu, T.T, Zhang, J, Xu, Y.B.
Deposit date:2022-07-11
Release date:2022-10-12
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and Functional Analysis of the Pyridoxal Phosphate Homeostasis Protein YggS from Fusobacterium nucleatum.
Molecules, 27, 2022
6LTJ
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BU of 6ltj by Molmil
Structure of nucleosome-bound human BAF complex
Descriptor: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ...
Authors:He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
Deposit date:2020-01-22
Release date:2020-02-12
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
6LTH
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BU of 6lth by Molmil
Structure of human BAF Base module
Descriptor: AT-rich interactive domain-containing protein 1A, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, ...
Authors:He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
Deposit date:2020-01-22
Release date:2020-02-12
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
1B3E
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BU of 1b3e by Molmil
HUMAN SERUM TRANSFERRIN, N-TERMINAL LOBE, EXPRESSED IN PICHIA PASTORIS
Descriptor: CARBONATE ION, FE (III) ION, PROTEIN (SERUM TRANSFERRIN)
Authors:Bewley, M.C, Tam, B.M, Grewal, J, He, S, Shewry, S, Murphy, M.E.P, Mason, A.B, Woodworth, R.C, Baker, E.N, Macgillivray, R.T.A.
Deposit date:1998-12-09
Release date:1999-03-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.
Biochemistry, 38, 1999
5O3L
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BU of 5o3l by Molmil
Paired helical filament in Alzheimer's disease brain
Descriptor: Microtubule-associated protein tau
Authors:Fitzpatrick, A.W.P, Falcon, B, He, S, Murzin, A.G, Murshudov, G, Garringer, H.G, Crowther, R.A, Ghetti, B, Goedert, M, Scheres, S.H.W.
Deposit date:2017-05-24
Release date:2017-07-26
Last modified:2019-07-24
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of tau filaments from Alzheimer's disease.
Nature, 547, 2017
5O3O
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BU of 5o3o by Molmil
Pronase-treated paired helical filament in Alzheimer's disease brain
Descriptor: Microtubule-associated protein tau
Authors:Fitzpatrick, A.W.P, Falcon, B, He, S, Murzin, A.G, Murshudov, G, Garringer, H.G, Crowther, R.A, Ghetti, B, Goedert, M, Scheres, S.H.W.
Deposit date:2017-05-24
Release date:2017-07-26
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of tau filaments from Alzheimer's disease.
Nature, 547, 2017
5O3T
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BU of 5o3t by Molmil
Straight filament in Alzheimer's disease brain
Descriptor: Microtubule-associated protein tau
Authors:Fitzpatrick, A.W.P, Falcon, B, He, S, Murzin, A.G, Murshudov, G, Garringer, H.G, Crowther, R.A, Ghetti, B, Goedert, M, Scheres, S.H.W.
Deposit date:2017-05-24
Release date:2017-07-26
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of tau filaments from Alzheimer's disease.
Nature, 547, 2017
6SRS
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BU of 6srs by Molmil
Structure of the Fanconi anaemia core subcomplex
Descriptor: Fanconi anaemia protein FANCL, Unassigned secondary structure elements (central region, proposed FANCB-FAAP100), ...
Authors:Shakeel, S, Rajendra, E, Alcon, P, He, S, Scheres, S.H.W, Passmore, L.A.
Deposit date:2019-09-05
Release date:2019-11-06
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structure of the Fanconi anaemia monoubiquitin ligase complex.
Nature, 575, 2019
6SRI
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BU of 6sri by Molmil
Structure of the Fanconi anaemia core complex
Descriptor: Fanconi anaemia protein FANCL, Unassigned secondary structure elements (base region, proposed FANCC-FANC-E-FANCF), ...
Authors:Shakeel, S, Rajendra, E, Alcon, P, He, S, Scheres, S.H.W, Passmore, L.A.
Deposit date:2019-09-05
Release date:2019-11-06
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of the Fanconi anaemia monoubiquitin ligase complex.
Nature, 575, 2019
6RZA
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BU of 6rza by Molmil
Cryo-EM structure of the human inner arm dynein DNAH7 microtubule binding domain bound to microtubules
Descriptor: Cytoplasmic dynein 1 heavy chain 1,Dynein heavy chain 7, axonemal,Cytoplasmic dynein 1 heavy chain 1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Lacey, S.E, He, S, Scheres, S.H.W, Carter, A.P.
Deposit date:2019-06-13
Release date:2019-07-10
Last modified:2019-07-17
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Cryo-EM of dynein microtubule-binding domains shows how an axonemal dynein distorts the microtubule.
Elife, 8, 2019
6RZB
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BU of 6rzb by Molmil
Cryo-EM structure of mouse cytoplasmic dynein-1 microtubule binding domain bound to microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Lacey, S.E, He, S, Scheres, S.H.W, Carter, A.P.
Deposit date:2019-06-13
Release date:2019-07-10
Last modified:2019-07-17
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Cryo-EM of dynein microtubule-binding domains shows how an axonemal dynein distorts the microtubule.
Elife, 8, 2019
7JFO
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BU of 7jfo by Molmil
EPYC1(49-72)-bound Rubisco
Descriptor: LCI5, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain 2, ...
Authors:Matthies, D, Jonikas, M.C, He, S.
Deposit date:2020-07-17
Release date:2020-11-18
Last modified:2020-12-23
Method:ELECTRON MICROSCOPY (2.13 Å)
Cite:The structural basis of Rubisco phase separation in the pyrenoid.
Nat.Plants, 6, 2020

 

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