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PDB: 32 results

5X1N
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BU of 5x1n by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1M
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BU of 5x1m by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1I
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BU of 5x1i by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, substrate free form
Descriptor: 1,2-ETHANEDIOL, Vanillate/3-O-methylgallate O-demethylase
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1J
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BU of 5x1j by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, vanillate complex form
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-HYDROXY-3-METHOXYBENZOATE, ...
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1K
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BU of 5x1k by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, 3-O-methylgallate complex form
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methoxy-4,5-bis(oxidanyl)benzoic acid, ...
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
5X1L
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BU of 5x1l by Molmil
Vanillate/3-O-methylgallate O-demethylase, LigM, tetrahydrofolate complex form
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, Vanillate/3-O-methylgallate O-demethylase
Authors:Harada, A, Senda, T.
Deposit date:2017-01-26
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
FEBS J., 284, 2017
6LTC
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BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTB
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BU of 6ltb by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-AMPPNP bound form
Descriptor: Nonribosomal peptide synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTA
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BU of 6lta by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)
Descriptor: ACRYLIC ACID, Nonribosomal peptide synthetase
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTD
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BU of 6ltd by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, Nonribosomal peptide synthetase, alpha-methyl-L-serine
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
8WDV
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BU of 8wdv by Molmil
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, Antenna complex alpha/beta subunit, ...
Authors:Tani, K, Kanno, R, Harada, A, Kobayashi, A, Minamino, A, Nakamura, N, Ji, X.-C, Purba, E.R, Hall, M, Yu, L.-J, Madigan, M.T, Mizoguchi, A, Iwasaki, K, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
Deposit date:2023-09-16
Release date:2024-02-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.
Commun Biol, 7, 2024
8WDU
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BU of 8wdu by Molmil
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, Antenna complex alpha/beta subunit, ...
Authors:Tani, K, Kanno, R, Harada, A, Kobayashi, A, Minamino, A, Nakamura, N, Ji, X.-C, Purba, E.R, Hall, M, Yu, L.-J, Madigan, M.T, Mizoguchi, A, Iwasaki, K, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
Deposit date:2023-09-16
Release date:2024-02-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.
Commun Biol, 7, 2024
4Z5T
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BU of 4z5t by Molmil
The nucleosome containing human H3.5
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Urahama, T, Harada, A, Maehara, K, Horikoshi, N, Sato, K, Sato, Y, Shiraishi, K, Sugino, N, Osakabe, A, Tachiwana, H, Kagawa, W, Kimura, H, Ohkawa, Y, Kurumizaka, H.
Deposit date:2015-04-03
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin, 9, 2016
4GNA
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BU of 4gna by Molmil
mouse SMP30/GNL-xylitol complex
Descriptor: CALCIUM ION, Regucalcin, SULFATE ION, ...
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013
4GNC
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BU of 4gnc by Molmil
human SMP30/GNL-1,5-AG complex
Descriptor: 1,5-anhydro-D-glucitol, CALCIUM ION, Regucalcin
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013
4GN9
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BU of 4gn9 by Molmil
mouse SMP30/GNL-glucose complex
Descriptor: CALCIUM ION, Regucalcin, SULFATE ION, ...
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013
4H4S
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BU of 4h4s by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175C/Q177G mutant (reduced form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4GNB
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BU of 4gnb by Molmil
human SMP30/GNL
Descriptor: CALCIUM ION, Regucalcin
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013
4GN8
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BU of 4gn8 by Molmil
mouse SMP30/GNL-1,5-AG complex
Descriptor: 1,5-anhydro-D-glucitol, CALCIUM ION, Regucalcin, ...
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013
4H4Q
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BU of 4h4q by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175Q/Q177K (reduced form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4W
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BU of 4h4w by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175C/T176R/Q177G mutant (reduced form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4Z
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BU of 4h4z by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175Q/T176R/Q177G mutant (oxidized form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H50
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BU of 4h50 by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175Q/T1776R/Q177G mutant (reduced form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4V
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BU of 4h4v by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175C/T176R/Q177G mutant (oxidized form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4GN7
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BU of 4gn7 by Molmil
mouse SMP30/GNL
Descriptor: CALCIUM ION, Regucalcin, SULFATE ION
Authors:Aizawa, S, Senda, M, Harada, A, Maruyama, N, Ishida, T, Aigaki, T, Ishigami, A, Senda, T.
Deposit date:2012-08-17
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase
Plos One, 8, 2013

 

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