Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 61 results

5JNX
DownloadVisualize
BU of 5jnx by Molmil
The 6.6 A cryo-EM structure of the full-length human NPC1 in complex with the cleaved glycoprotein of Ebola virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein, ...
Authors:Gong, X, Qian, H.W, Zhou, X.H, Wu, J.P, Wan, T, Shi, Y, Gao, F, Zhou, Q, Yan, N.
Deposit date:2016-05-01
Release date:2016-06-15
Last modified:2020-08-05
Method:ELECTRON MICROSCOPY (6.56 Å)
Cite:Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection
Cell, 165, 2016
4TTP
DownloadVisualize
BU of 4ttp by Molmil
Crystal structure of Legionella pneumophila dephospho-CoA kinase in apo-form
Descriptor: Dephospho-CoA kinase
Authors:Gong, X, Ge, H.
Deposit date:2014-06-22
Release date:2014-12-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Legionella pneumophila dephospho-CoA kinase reveals a non-canonical conformation of P-loop.
J.Struct.Biol., 188, 2014
4YHC
DownloadVisualize
BU of 4yhc by Molmil
Crystal structure of the WD40 domain of SCAP from fission yeast
Descriptor: CITRIC ACID, Sterol regulatory element-binding protein cleavage-activating protein
Authors:Gong, X, Li, J.X, Wu, J.P, Yan, C.Y, Yan, N.
Deposit date:2015-02-27
Release date:2015-04-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the WD40 domain of SCAP from fission yeast reveals the molecular basis for SREBP recognition.
Cell Res., 25, 2015
3JD8
DownloadVisualize
BU of 3jd8 by Molmil
cryo-EM structure of the full-length human NPC1 at 4.4 angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Gong, X, Qian, H.W, Zhou, X.H, Wu, J.P, Zhou, Q, Yan, N.
Deposit date:2016-05-01
Release date:2016-06-01
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.43 Å)
Cite:The structure of Niemann-Pick C1 protein
To Be Published
5GPD
DownloadVisualize
BU of 5gpd by Molmil
Crystal structure of the binding domain of SREBP from fission yeast
Descriptor: Sterol regulatory element-binding protein 1
Authors:Gong, X, Qian, H.W, Wu, J.P, Yan, N.
Deposit date:2016-08-01
Release date:2016-11-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.501 Å)
Cite:Complex structure of the fission yeast SREBP-SCAP binding domains reveals an oligomeric organization
Cell Res., 26, 2016
8I2N
DownloadVisualize
BU of 8i2n by Molmil
The RIPK1 kinase domain in complex with QY7-2B compound
Descriptor: Receptor-interacting serine/threonine-protein kinase 1, ~{N}-methyl-1-[4-[[[1-methyl-5-(phenylmethyl)pyrazol-3-yl]carbonylamino]methyl]phenyl]benzimidazole-5-carboxamide
Authors:Gong, X.Y, Li, Y, Meng, H.Y, Pan, L.F.
Deposit date:2023-01-14
Release date:2024-01-31
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The RIPK1 kinase domain in complex with QY7-2B compound
To Be Published
5GRS
DownloadVisualize
BU of 5grs by Molmil
Complex structure of the fission yeast SREBP-SCAP binding domains
Descriptor: Sterol regulatory element-binding protein 1, Sterol regulatory element-binding protein cleavage-activating protein
Authors:Gong, X, Qian, H.W, Wu, J.P, Yan, N.
Deposit date:2016-08-12
Release date:2016-12-14
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Complex structure of the fission yeast SREBP-SCAP binding domains reveals an oligomeric organization
Cell Res., 26, 2016
6A0Q
DownloadVisualize
BU of 6a0q by Molmil
The crystal structure of Lpg2622_E64 complex
Descriptor: Lpg2622, N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE
Authors:Gong, X, Ge, H.
Deposit date:2018-06-06
Release date:2018-09-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of the hypothetical protein Lpg2622, a new member of the C1 family peptidases from Legionella pneumophila
FEBS Lett., 592, 2018
6A0N
DownloadVisualize
BU of 6a0n by Molmil
The crystal structure of apo-Lpg2622
Descriptor: Lpg2622
Authors:Gong, X, Ge, H.
Deposit date:2018-06-05
Release date:2018-09-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural characterization of the hypothetical protein Lpg2622, a new member of the C1 family peptidases from Legionella pneumophila
FEBS Lett., 592, 2018
7XFR
DownloadVisualize
BU of 7xfr by Molmil
Crystal structure of WIPI2b in complex with the second site of ATG16L1
Descriptor: Autophagy-related protein 16-1, Isoform 2 of WD repeat domain phosphoinositide-interacting protein 2
Authors:Gong, X.Y, Pan, L.F.
Deposit date:2022-04-02
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:ATG16L1 adopts a dual-binding site mode to interact with WIPI2b in autophagy.
Sci Adv, 9, 2023
5ZFM
DownloadVisualize
BU of 5zfm by Molmil
Ketoreductase LbCR mutant - M6
Descriptor: 3-oxoacyl-acyl carrier protein reductase
Authors:Gong, X.M, Zheng, G.W, Xu, J.H.
Deposit date:2018-03-06
Release date:2019-01-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of an Engineered Ketoreductase with Simultaneously Improved Thermostability and Activity for Making a Bulky Atorvastatin Precursor
Acs Catalysis, 9, 2019
5ZI0
DownloadVisualize
BU of 5zi0 by Molmil
Ketoreductase LbCR mutant - M8
Descriptor: 3-oxoacyl-acyl carrier protein reductase
Authors:Gong, X.M, Zheng, G.W, Xu, J.H.
Deposit date:2018-03-14
Release date:2019-01-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Development of an Engineered Ketoreductase with Simultaneously Improved Thermostability and Activity for Making a Bulky Atorvastatin Precursor
Acs Catalysis, 9, 2019
7F69
DownloadVisualize
BU of 7f69 by Molmil
Crystal structure of WIPI2b in complex with ATG16L1
Descriptor: Isoform 2 of Autophagy-related protein 16-1, Isoform 2 of WD repeat domain phosphoinositide-interacting protein 2
Authors:Gong, X.Y, Pan, L.F.
Deposit date:2021-06-24
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:ATG16L1 adopts a dual-binding site mode to interact with WIPI2b in autophagy.
Sci Adv, 9, 2023
6DMY
DownloadVisualize
BU of 6dmy by Molmil
Cryo-EM structure of human Ptch1 and ShhN complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-06-05
Release date:2018-07-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for the recognition of Sonic Hedgehog by human Patched1.
Science, 361, 2018
6DMO
DownloadVisualize
BU of 6dmo by Molmil
Cryo-EM structure of human Ptch1 with three mutations L282Q/T500F/P504L
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Protein patched homolog 1
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-06-05
Release date:2018-07-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for the recognition of Sonic Hedgehog by human Patched1.
Science, 361, 2018
6M49
DownloadVisualize
BU of 6m49 by Molmil
cryo-EM structure of Scap/Insig complex in the present of 25-hydroxyl cholesterol.
Descriptor: 25-HYDROXYCHOLESTEROL, Insulin-induced gene 2 protein, Sterol regulatory element-binding protein cleavage-activating protein,Sterol regulatory element-binding protein cleavage-activating protein
Authors:Yan, R, Cao, P, Song, W, Qian, H, Du, X, Coates, H.W, Zhao, X, Li, Y, Gao, S, Gong, X, Liu, X, Sui, J, Lei, J, Yang, H, Brown, A.J, Zhou, Q, Yan, C, Yan, N.
Deposit date:2020-03-06
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A structure of human Scap bound to Insig-2 suggests how their interaction is regulated by sterols.
Science, 371, 2021
6DMB
DownloadVisualize
BU of 6dmb by Molmil
Cryo-EM structure of human Ptch1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-06-04
Release date:2018-07-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for the recognition of Sonic Hedgehog by human Patched1.
Science, 361, 2018
6N7H
DownloadVisualize
BU of 6n7h by Molmil
Cryo-EM structure of the 2:1 hPtch1-Shhp complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-11-27
Release date:2019-05-29
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Inhibition of tetrameric Patched1 by Sonic Hedgehog through an asymmetric paradigm.
Nat Commun, 10, 2019
6N7G
DownloadVisualize
BU of 6n7g by Molmil
Cryo-EM structure of tetrameric Ptch1 in complex with ShhNp (form I)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-11-27
Release date:2019-05-29
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Inhibition of tetrameric Patched1 by Sonic Hedgehog through an asymmetric paradigm.
Nat Commun, 10, 2019
6N7K
DownloadVisualize
BU of 6n7k by Molmil
Cryo-EM structure of tetrameric Ptch1 in complex with ShhNp (form II)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yan, N, Gong, X, Qian, H.W.
Deposit date:2018-11-27
Release date:2019-05-29
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Inhibition of tetrameric Patched1 by Sonic Hedgehog through an asymmetric paradigm.
Nat Commun, 10, 2019
5H6X
DownloadVisualize
BU of 5h6x by Molmil
The crystal structure of RpoS fragment including a partial region 1.2 and region 2 from intracellular pathogen Legionella pneumophila
Descriptor: GLYCEROL, RNA polymerase sigma factor RpoS, SODIUM ION
Authors:Zhang, N, Chen, X, Gong, X, Ge, H.
Deposit date:2016-11-15
Release date:2017-11-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-Resolution Crystal Structure of RpoS Fragment including a Partial Region 1.2 and Region 2 from the Intracellular Pathogen Legionella pneumophila
Crystals, 8, 2018
5ESW
DownloadVisualize
BU of 5esw by Molmil
Crystal structure of Apo hypoxanthine-guanine phosphoribosyltransferase from Legionella pneumophila
Descriptor: PHOSPHATE ION, Purine/pyrimidine phosphoribosyltransferase
Authors:Zhang, N, Gong, X, Lu, M, Chen, X, Qin, X, Ge, H.
Deposit date:2015-11-17
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of Apo and GMP bound hypoxanthine-guanine phosphoribosyltransferase from Legionella pneumophila and the implications in gouty arthritis
J.Struct.Biol., 194, 2016
5ESX
DownloadVisualize
BU of 5esx by Molmil
Crystal structure of hypoxanthine-guanine phosphoribosyltransferase complexed with GMP from Legionella pneumophila
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Purine/pyrimidine phosphoribosyltransferase
Authors:Zhang, N, Gong, X, Lu, M, Chen, X, Qin, X, Ge, H.
Deposit date:2015-11-17
Release date:2016-03-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structures of Apo and GMP bound hypoxanthine-guanine phosphoribosyltransferase from Legionella pneumophila and the implications in gouty arthritis
J.Struct.Biol., 194, 2016
6M4O
DownloadVisualize
BU of 6m4o by Molmil
Cryo-EM structure of the monomeric SPT-ORMDL3 complex
Descriptor: ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, Serine palmitoyltransferase 1, ...
Authors:Li, S.S, Xie, T, Wang, L, Gong, X.
Deposit date:2020-03-08
Release date:2021-02-10
Last modified:2021-03-24
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into the assembly and substrate selectivity of human SPT-ORMDL3 complex.
Nat.Struct.Mol.Biol., 28, 2021
6M4N
DownloadVisualize
BU of 6m4n by Molmil
Cryo-EM structure of the dimeric SPT-ORMDL3 complex
Descriptor: ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, Serine palmitoyltransferase 1, ...
Authors:Li, S.S, Xie, T, Wang, L, Gong, X.
Deposit date:2020-03-07
Release date:2021-02-10
Last modified:2021-03-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insights into the assembly and substrate selectivity of human SPT-ORMDL3 complex.
Nat.Struct.Mol.Biol., 28, 2021

 

123>

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon