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PDB: 140 results

8YY8
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Fzd7 -Gs complex
Descriptor: Frizzled-7, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Chen, B, Xu, L, Han, G.W, Xu, F.
Deposit date:2024-04-03
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Cryo-EM structure of constitutively active human Frizzled 7 in complex with heterotrimeric G s .
Cell Res., 31, 2021
2BF1
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Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chen, B, Vogan, E.M, Gong, H, Skehel, J.J, Wiley, D.C, Harrison, S.C.
Deposit date:2004-12-02
Release date:2005-02-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core
Nature, 433, 2005
4UMK
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The complex of Spo0J and parS DNA in chromosomal partition system
Descriptor: DNA, PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB, SULFATE ION
Authors:Chen, B.W, Chu, C.H, Tung, J.Y, Hsu, C.E, Hsiao, C.D, Sun, Y.J.
Deposit date:2014-05-19
Release date:2015-05-13
Last modified:2018-08-29
Method:X-RAY DIFFRACTION (3.096 Å)
Cite:Insights into ParB spreading from the complex structure of Spo0J and parS.
Proc. Natl. Acad. Sci. U.S.A., 112, 2015
3RBT
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BU of 3rbt by Molmil
Crystal structure of glutathione S-transferase Omega 3 from the silkworm Bombyx mori
Descriptor: GLYCEROL, Glutathione transferase o1
Authors:Chen, B.-Y, Ma, X.-X, Tan, X, Yang, J.-P, Zhang, N.-N, Li, W.-F, Chen, Y, Xia, Q, Zhou, C.-Z.
Deposit date:2011-03-29
Release date:2011-08-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-guided activity restoration of the silkworm glutathione transferase Omega GSTO3-3
J.Mol.Biol., 412, 2011
8HMP
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GPR52 with Gs and c17
Descriptor: G-protein coupled receptor 52, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Chen, B, Xu, F.
Deposit date:2022-12-05
Release date:2023-06-21
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Allosteric coupling between G-protein binding and extracellular ligand binding sites in GPR52 revealed by 19 F-NMR and cryo-electron microscopy.
MedComm (2020), 4, 2023
7UBY
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BU of 7uby by Molmil
Structure of the GTD domain of Clostridium difficile toxin A in complex with VHH AH3
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucosyltransferase TcdA, ...
Authors:Chen, B, Rongsheng, J, Kay, P.
Deposit date:2022-03-15
Release date:2022-11-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Neutralizing epitopes on Clostridioides difficile toxin A revealed by the structures of two camelid VHH antibodies.
Front Immunol, 13, 2022
7UBX
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Structure of a pore forming fragment of Clostridium difficile toxin A in complex with VHH AA6
Descriptor: Nanobody VHH AA6, Toxin A
Authors:Chen, B, Rongsheng, J, Kay, P.
Deposit date:2022-03-15
Release date:2022-11-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Neutralizing epitopes on Clostridioides difficile toxin A revealed by the structures of two camelid VHH antibodies.
Front Immunol, 13, 2022
8HJ1
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GPR21(wt) and Gs complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Chen, B, Lin, X, Xu, F.
Deposit date:2022-11-22
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HIX
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Cryo-EM structure of GPR21_m5_Gs
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Chen, B, Lin, X, Xu, F.
Deposit date:2022-11-22
Release date:2023-03-15
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HJ0
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GPR21(m5) and G15 complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Chen, B, Lin, X.
Deposit date:2022-11-22
Release date:2023-03-15
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
8HJ2
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GPR21 wt with G15 complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Chen, B, Lin, X, Xu, F.
Deposit date:2022-11-22
Release date:2023-03-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of orphan GPR21 signaling complexes.
Nat Commun, 14, 2023
3M0E
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BU of 3m0e by Molmil
Crystal structure of the ATP-bound state of Walker B mutant of NtrC1 ATPase domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Transcriptional regulator (NtrC family)
Authors:Chen, B, Sysoeva, T.A, Chowdhury, S, Rusu, M, Birmanns, S, Guo, L, Hanson, J, Yang, H, Nixon, B.T.
Deposit date:2010-03-02
Release date:2010-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase.
Structure, 18, 2010
1ZA8
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BU of 1za8 by Molmil
NMR solution structure of a leaf-specific-expressed cyclotide vhl-1
Descriptor: vhl-1
Authors:Chen, B, Colgrave, M.L, Daly, N.L, Rosengren, K.J, Gustafson, K.R, Craik, D.J.
Deposit date:2005-04-05
Release date:2005-04-12
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Isolation and characterization of novel cyclotides from Viola hederaceae: solution structure and anti-HIV activity of vhl-1, a leaf-specific expressed cyclotide.
J.Biol.Chem., 280, 2005
4MG2
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BU of 4mg2 by Molmil
ALKBH2 F102A cross-linked to undamaged dsDNA
Descriptor: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA-1, DNA-2, ...
Authors:Chen, B, Gan, J, Yang, C.G.
Deposit date:2013-08-28
Release date:2014-02-26
Last modified:2014-06-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem, 57, 2014
7Y1F
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BU of 7y1f by Molmil
Cryo-EM structure of human k-opioid receptor-Gi complex
Descriptor: Dynorphin, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Chen, B.O, Xu, F.E.
Deposit date:2022-06-08
Release date:2023-05-24
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of human kappa-opioid receptor-Gi complex bound to an endogenous agonist dynorphin A.
Protein Cell, 14, 2023
2L0K
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BU of 2l0k by Molmil
NMR solution structure of a transcription factor SpoIIID in complex with DNA
Descriptor: Stage III sporulation protein D
Authors:Chen, B, Himes, P, Lu, Z, Liu, A, Yan, H, Kroos, L.
Deposit date:2010-07-08
Release date:2011-08-17
Method:SOLUTION NMR
Cite:Novel Mode of DNA Binding by Bacterial Transcription Factor SpoIIID
To be Published
4MGT
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BU of 4mgt by Molmil
ALKBH2 R110A cross-linked to undamaged dsDNA
Descriptor: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA1, DNA2, ...
Authors:Chen, B, Gan, J, Yang, C.G.
Deposit date:2013-08-28
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem, 57, 2014
7D5C
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BU of 7d5c by Molmil
IleRS in complex with a tRNA site inhibitor
Descriptor: (2E,4S,5S,6E,8E)-10-[(2S,3R,6S,8R,9S)-3-butyl-9-methyl-2-[(1E,3E)-3-methyl-5-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-3-(4-oxidanyl-4-oxidanylidene-butanoyl)oxy-1,7-dioxaspiro[5.5]undecan-8-yl]-4,8-dimethyl-5-oxidanyl-deca-2,6,8-trienoic acid, 1,2-ETHANEDIOL, Isoleucine--tRNA ligase, ...
Authors:Chen, B, Luo, S, Zhou, H.
Deposit date:2020-09-25
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Inhibitory mechanism of reveromycin A at the tRNA binding site of a class I synthetase.
Nat Commun, 12, 2021
5YHU
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BU of 5yhu by Molmil
Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
Descriptor: Myelin regulatory factor
Authors:Chen, B, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2017-09-30
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
5ZHU
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Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
Descriptor: Myelin regulatory factor
Authors:Chen, B, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2018-03-13
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
4V94
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Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Leitner, A, Joachimiak, L.A, Bracher, A, Walzthoeni, T, Chen, B, Monkemeyer, L, Pechmann, S, Holmes, S, Cong, Y, Ma, B, Ludtke, S, Chiu, W, Hartl, F.U, Aebersold, R, Frydman, J.
Deposit date:2012-01-11
Release date:2014-07-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Molecular Architecture of the Eukaryotic Chaperonin TRiC/CCT.
Structure, 20, 2012
5JYN
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BU of 5jyn by Molmil
Structure of the transmembrane domain of HIV-1 gp41 in bicelle
Descriptor: Envelope glycoprotein gp160
Authors:Dev, J, Fu, Q, Park, D, Chen, B, Chou, J.J.
Deposit date:2016-05-14
Release date:2016-06-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for membrane anchoring of HIV-1 envelope spike.
Science, 353, 2016
6XR8
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BU of 6xr8 by Molmil
Distinct conformational states of SARS-CoV-2 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J, Cai, Y.F, Xiao, T.S, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Rawson, S, Volloch, S.R, Chen, B.
Deposit date:2020-07-11
Release date:2020-07-22
Last modified:2020-11-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Distinct conformational states of SARS-CoV-2 spike protein.
Science, 369, 2020
6XRA
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BU of 6xra by Molmil
Distinct conformational states of SARS-CoV-2 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Zhang, J, Cai, Y.F, Xiao, T.S, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Rawson, S, Rits-Volloch, S, Chen, B.
Deposit date:2020-07-11
Release date:2020-07-22
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Distinct conformational states of SARS-CoV-2 spike protein.
Science, 369, 2020
8SYM
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BU of 8sym by Molmil
Human VPS29/VPS35L Complex (Locally refined map)
Descriptor: VPS35 endosomal protein-sorting factor-like, Vacuolar protein sorting-associated protein 29
Authors:Chen, Z, Chen, B, Burstein, E, Han, Y.
Deposit date:2023-05-25
Release date:2023-11-01
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural organization of the retriever-CCC endosomal recycling complex.
Nat.Struct.Mol.Biol., 2023

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