Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 129 results

1D3W
DownloadVisualize
BU of 1d3w by Molmil
Crystal structure of ferredoxin 1 d15e mutant from azotobacter vinelandii at 1.7 angstrom resolution.
Descriptor: FE3-S4 CLUSTER, FERREDOXIN 1, IRON/SULFUR CLUSTER
Authors:Chen, K, Hirst, J, Camba, R, Bonagura, C.A, Stout, C.D, Burges, B.K, Armstrong, F.A.
Deposit date:1999-10-01
Release date:1999-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Atomically defined mechanism for proton transfer to a buried redox centre in a protein.
Nature, 405, 2000
4S0G
DownloadVisualize
BU of 4s0g by Molmil
Crystal structure of PTPN3 (PTPH1) in complex with Eps15 pTyr849 P850V peptide
Descriptor: Peptide from Epidermal growth factor receptor substrate 15, Tyrosine-protein phosphatase non-receptor type 3
Authors:Chen, K.-E, Meng, T.C, Wang, A.H.-J.
Deposit date:2014-12-31
Release date:2015-03-11
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.723 Å)
Cite:Substrate specificity and plasticity of FERM-containing protein tyrosine phosphatases.
Structure, 23, 2015
6XS9
DownloadVisualize
BU of 6xs9 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS7
DownloadVisualize
BU of 6xs7 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D2
Descriptor: 48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG, FORMIC ACID, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XSA
DownloadVisualize
BU of 6xsa by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L2
Descriptor: 48V-TYR-LEU-PRO-THR-ILE-THR-GLY-VAL-GLY-HIS-LEU-TRP-HIS-PRO-LEU, SULFATE ION, Vacuolar protein sorting-associated protein 29
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS5
DownloadVisualize
BU of 6xs5 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1
Descriptor: 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG, FORMIC ACID, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS8
DownloadVisualize
BU of 6xs8 by Molmil
Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3
Descriptor: 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA, Vacuolar protein sorting-associated protein 29
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95009851 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
2A4Q
DownloadVisualize
BU of 2a4q by Molmil
HCV NS3 protease with NS4a peptide and a covalently bound macrocyclic ketoamide compound.
Descriptor: (2R)-({N-[(3S)-3-({[(3S,6S)-6-CYCLOHEXYL-5,8-DIOXO-4,7-DIAZABICYCLO[14.3.1]ICOSA-1(20),16,18-TRIEN-3-YL]CARBONYL}AMINO)-2-OXOHEXANOYL]GLYCYL}AMINO)(PHENYL)ACETIC ACID, BETA-MERCAPTOETHANOL, NS3 protease/helicase', ...
Authors:Chen, K.X, Njoroge, F.G, Prongay, A, Pichardo, J, Madison, V, Girijavallabhan, V.
Deposit date:2005-06-29
Release date:2006-07-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Synthesis and Biological Activity of Macrocyclic Inhibitors of Hepatitis C Virus (HCV) NS3 Protease
Bioorg.Med.Chem.Lett., 15, 2005
6GFK
DownloadVisualize
BU of 6gfk by Molmil
delta-N METTL16 MTase domain
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
Authors:Chen, K.M, Mendel, M, Homolka, D, McCarthy, A.A, Pillai, R.S.
Deposit date:2018-04-30
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Methylation of Structured RNA by the m6A Writer METTL16 Is Essential for Mouse Embryonic Development.
Mol. Cell, 71, 2018
1F5B
DownloadVisualize
BU of 1f5b by Molmil
CRYSTAL STRUCTURE OF F2H FERREDOXIN 1 MUTANT FROM AZOTOBACTER VINELANDII AT 1.75 ANGSTROM RESOLUTION
Descriptor: FE3-S4 CLUSTER, FERREDOXIN 1, IRON/SULFUR CLUSTER
Authors:Chen, K, Bonagura, C.A, Tilley, G.J, Jung, Y.S, Armstrong, F.A, Stout, C.D, Burgess, B.K.
Deposit date:2000-06-13
Release date:2000-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structures of ferredoxin variants exhibiting large changes in [Fe-S] reduction potential.
Nat.Struct.Biol., 9, 2002
1F5C
DownloadVisualize
BU of 1f5c by Molmil
CRYSTAL STRUCTURE OF F25H FERREDOXIN 1 MUTANT FROM AZOTOBACTER VINELANDII AT 1.75 ANGSTROM RESOLUTION
Descriptor: FE3-S4 CLUSTER, FERREDOXIN 1, IRON/SULFUR CLUSTER, ...
Authors:Chen, K, Bonagura, C.A, Tilley, G.J, Jung, Y.S, Armstrong, F.A, Stout, C.D, Burgess, B.K.
Deposit date:2000-06-13
Release date:2000-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of ferredoxin variants exhibiting large changes in [Fe-S] reduction potential.
Nat.Struct.Biol., 9, 2002
6GFN
DownloadVisualize
BU of 6gfn by Molmil
METTL16 MTase domain
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
Authors:Chen, K.M, Mendel, M, Homolka, D, McCarthy, A.A, Pillai, R.S.
Deposit date:2018-05-01
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Methylation of Structured RNA by the m6A Writer METTL16 Is Essential for Mouse Embryonic Development.
Mol. Cell, 71, 2018
6GT5
DownloadVisualize
BU of 6gt5 by Molmil
METTL16 MTase domain (crystal form 2)
Descriptor: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
Authors:Chen, K.M, Mendel, M, Homolka, D, McCarthy, A.A, Pillai, R.S.
Deposit date:2018-06-15
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Methylation of Structured RNA by the m6A Writer METTL16 Is Essential for Mouse Embryonic Development.
Mol. Cell, 71, 2018
7JJC
DownloadVisualize
BU of 7jjc by Molmil
Crystal structure of neuropilin-1 b1 domain in complex with SARS-CoV-2 S1 C-end rule (CendR) peptide
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Neuropilin-1, ...
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2020-07-25
Release date:2020-10-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Neuropilin-1 is a host factor for SARS-CoV-2 infection.
Science, 370, 2020
2YOJ
DownloadVisualize
BU of 2yoj by Molmil
HCV NS5B polymerase complexed with pyridonylindole compound
Descriptor: 4-fluoranyl-6-[(7-fluoranyl-4-oxidanylidene-3H-quinazolin-6-yl)methyl]-8-(2-oxidanylidene-1H-pyridin-3-yl)furo[2,3-e]indole-7-carboxylic acid, PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE
Authors:Chen, K.X, Venkatraman, S, Anilkumar, G.N, Zeng, Q, Lesburg, C.A, Vibulbhan, B, Yang, W, Velazquez, F, Chan, T.-Y, Bennett, F, Sannigrahi, M, Jiang, Y, Duca, J.S, Pinto, P, Gavalas, S, Huang, Y, Wu, W, Selyutin, O, Agrawal, S, Feld, B, Huang, H.-C, Li, C, Cheng, K.-C, Shih, N.-Y, Kozlowski, J.A, Rosenblum, S.B, Njoroge, F.G.
Deposit date:2012-10-24
Release date:2013-10-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Discovery of Sch 900188: A Potent Hepatitis C Virus Ns5B Polymerase Inhibitor Prodrug as a Development Candidate
Acs Med.Chem.Lett., 5, 2014
5VF1
DownloadVisualize
BU of 5vf1 by Molmil
X-ray Crystallographic Structure of a Giant Double-Walled Peptide Nanotube Formed by a Macrocyclic Beta-Sheet Containing ABeta16-22
Descriptor: ORN-LYS-LEU-VAL-PHI-PHE-ALA-GLU-ORN-GLU-ALA-PHE-MEA-VAL-LEU-LYS
Authors:Chen, K.H, Corro, K.A, Le, S.P, Nowick, J.S.
Deposit date:2017-04-06
Release date:2017-06-21
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray Crystallographic Structure of a Giant Double-Walled Peptide Nanotube Formed by a Macrocyclic beta-Sheet Containing A beta 16-22.
J. Am. Chem. Soc., 139, 2017
6BTZ
DownloadVisualize
BU of 6btz by Molmil
Crystal structure of the PI3KC2alpha C2 domain in space group C121
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, GLYCEROL, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, ...
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
6BU0
DownloadVisualize
BU of 6bu0 by Molmil
Crystal structure of the PI3KC2alpha C2 domain in complex with IP6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, FORMIC ACID, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.427 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
2JYW
DownloadVisualize
BU of 2jyw by Molmil
Solution structure of C-terminal domain of APOBEC3G
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Chen, K, Harjes, E, Gross, P.J, Fahmy, A, Lu, Y, Shindo, K, Harris, R.S, Matsuo, H.
Deposit date:2007-12-20
Release date:2008-02-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G.
Nature, 452, 2008
4DWN
DownloadVisualize
BU of 4dwn by Molmil
Crystal Structure of Human BinCARD CARD
Descriptor: Bcl10-interacting CARD protein, SULFATE ION
Authors:Chen, K.-E, Kobe, B, Martin, J.L.
Deposit date:2012-02-26
Release date:2013-02-06
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:The structure of the caspase recruitment domain of BinCARD reveals that all three cysteines can be oxidized.
Acta Crystallogr.,Sect.D, 69, 2013
4FH0
DownloadVisualize
BU of 4fh0 by Molmil
Crystal Structure of Human BinCARD CARD, double mutant F16M/L66M SeMet form
Descriptor: Bcl10-interacting CARD protein, SULFATE ION
Authors:Chen, K.-E, Kobe, B, Martin, J.L.
Deposit date:2012-06-05
Release date:2013-02-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The structure of the caspase recruitment domain of BinCARD reveals that all three cysteines can be oxidized.
Acta Crystallogr.,Sect.D, 69, 2013
3UX3
DownloadVisualize
BU of 3ux3 by Molmil
Crystal Structure of Domain-Swapped Fam96a minor dimer
Descriptor: ACETATE ION, MIP18 family protein FAM96A, ZINC ION
Authors:Chen, K.-E, Kobe, B, Martin, J.L.
Deposit date:2011-12-03
Release date:2012-05-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The mammalian DUF59 protein Fam96a forms two distinct types of domain-swapped dimer.
Acta Crystallogr.,Sect.D, 68, 2012
3UX2
DownloadVisualize
BU of 3ux2 by Molmil
Crystal Structure of Domain-Swapped Fam96a Major dimer
Descriptor: MIP18 family protein FAM96A
Authors:Chen, K.-E, Kobe, B, Martin, J.L.
Deposit date:2011-12-03
Release date:2012-05-30
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The mammalian DUF59 protein Fam96a forms two distinct types of domain-swapped dimer.
Acta Crystallogr.,Sect.D, 68, 2012
6BTY
DownloadVisualize
BU of 6bty by Molmil
Crystal structure of the PI3KC2alpha C2 domain in space group P41212
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-08
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.678 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018
6BUB
DownloadVisualize
BU of 6bub by Molmil
Crystal structure of the PI3KC2alpha PX domain in space group P432
Descriptor: GLYCEROL, Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, SULFATE ION
Authors:Chen, K.-E, Collins, B.M.
Deposit date:2017-12-09
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2 alpha.
Structure, 26, 2018

220760

PDB entries from 2024-06-05

PDB statisticsPDBj update infoContact PDBjnumon