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7K3W
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BU of 7k3w by Molmil
Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Zhang, K, Pintilie, G, Li, S, Schmid, M, Chiu, W.
Deposit date:2020-09-14
Release date:2020-11-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (1.36 Å)
Cite:Resolving individual atoms of protein complex by cryo-electron microscopy.
Cell Res., 30, 2020
7KIP
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BU of 7kip by Molmil
A 3.4 Angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Zhang, K, Li, S, Pintilie, G, Chmielewski, D, Schmid, M, Simmons, G, Jin, J, Chiu, W.
Deposit date:2020-10-24
Release date:2020-11-11
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:A 3.4- angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles.
Biorxiv, 2020
2L1F
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BU of 2l1f by Molmil
Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography
Descriptor: RNA (65-MER), RNA (66-MER)
Authors:Summers, M.F, Irobalieva, R.N, Tolbert, B, Smalls-Manty, A, Iyalla, K, Loeliger, K, D'Souza, V, Khant, H, Schmid, M, Garcia, E, Telesnitsky, A, Chiu, W, Miyazaki, Y.
Deposit date:2010-07-28
Release date:2010-10-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.
J.Mol.Biol., 404, 2010
3EOJ
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BU of 3eoj by Molmil
Fmo protein from Prosthecochloris Aestuarii 2K AT 1.3A Resolution
Descriptor: 1,2-ETHANEDIOL, AMMONIUM ION, BACTERIOCHLOROPHYLL A, ...
Authors:Tronrud, D.E, Wen, J, Gay, L, Blankenship, R.E.
Deposit date:2008-09-27
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.
Photosynth.Res., 100, 2009
7RRP
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BU of 7rrp by Molmil
Apoferritin structure at 1.27 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Pintilie, G, Zhang, K, Chiu, W.
Deposit date:2021-08-10
Release date:2021-08-18
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (1.27 Å)
Cite:Resolving individual atoms of protein complex by cryo-electron microscopy.
Cell Res., 30, 2020
7R9J
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BU of 7r9j by Molmil
Methanococcus maripaludis chaperonin, open conformation 4
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9I
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BU of 7r9i by Molmil
Methanococcus maripaludis chaperonin, open conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9K
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BU of 7r9k by Molmil
Methanococcus maripaludis chaperonin, closed conformation 4
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9M
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BU of 7r9m by Molmil
Methanococcus maripaludis chaperonin, closed conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9H
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BU of 7r9h by Molmil
Methanococcus maripaludis chaperonin, open conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9E
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BU of 7r9e by Molmil
Methanococcus maripaludis chaperonin, open conformation 1
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7RAK
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BU of 7rak by Molmil
Methanococcus maripaludis chaperonin complex in open conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-07-01
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9O
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BU of 7r9o by Molmil
Methanococcus maripaludis chaperonin, closed conformation 1
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9U
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BU of 7r9u by Molmil
Methanococcus maripaludis chaperonin, closed conformation 3
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
8U2C
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BU of 8u2c by Molmil
Gaussian mixture model based single particle refinement - ABC transporter (inhibitor-bound ABCG2 from EMPIAR-10374)
Descriptor: 5D3 Fab heavy chain variable domain, 5D3 Fab light chain variable domain, Broad substrate specificity ATP-binding cassette transporter ABCG2, ...
Authors:Chen, M, Pintilie, G.
Deposit date:2023-09-05
Release date:2023-11-15
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Improving resolution and resolvability of single-particle cryoEM structures using Gaussian mixture models.
Nat.Methods, 21, 2024
8U28
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BU of 8u28 by Molmil
Gaussian mixture model based single particle refinement - SARS (SARS-CoV-2 Spike Proteins on intact virions from EMPIAR-10492)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Chen, M, Pintilie, G.
Deposit date:2023-09-05
Release date:2023-11-15
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Improving resolution and resolvability of single-particle cryoEM structures using Gaussian mixture models.
Nat.Methods, 21, 2024
8U26
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BU of 8u26 by Molmil
Gaussian Mixture Models based single particle refinement - GPCR (Substance P bound to active human neurokinin 1 receptor in complex with miniGs399 from EMPIAR-10786)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Chen, M, Pintilie, G.
Deposit date:2023-09-05
Release date:2023-11-15
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Improving resolution and resolvability of single-particle cryoEM structures using Gaussian mixture models.
Nat.Methods, 21, 2024
6VQV
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BU of 6vqv by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF9
Descriptor: AcrF9, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VQX
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BU of 6vqx by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF6
Descriptor: AcrF6, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VQW
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BU of 6vqw by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF8
Descriptor: AcrF8, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
Authors:Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
Deposit date:2020-02-06
Release date:2020-03-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
5NC5
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BU of 5nc5 by Molmil
Crystal structure of AcrBZ in complex with antibiotic puromycin
Descriptor: DARPin, DECANE, DODECANE, ...
Authors:Du, D, Luisi, B.
Deposit date:2017-03-03
Release date:2017-04-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump.
Elife, 6, 2017
5O66
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BU of 5o66 by Molmil
Asymmetric AcrABZ-TolC
Descriptor: Multidrug efflux pump accessory protein AcrZ, Multidrug efflux pump subunit AcrA, Multidrug efflux pump subunit AcrB, ...
Authors:Du, D, Luisi, B.F.
Deposit date:2017-06-05
Release date:2017-06-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.9 Å)
Cite:An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump.
Elife, 6, 2017
4BCL
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BU of 4bcl by Molmil
FMO protein from Prosthecochloris aestuarii 2K at Room Temperature
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOCHLOROPHYLL A PROTEIN
Authors:Tronrud, D.E, Matthews, B.W.
Deposit date:1998-04-17
Release date:1998-09-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Refinement of the Structure of a Water-Soluble Antenna Complex from Green Photosynthetic Bacteria by Incorporation of the Chemically Determined Amino Acid Sequence
Photosynthetic Reaction Center, 1, 1993
6NUD
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BU of 6nud by Molmil
Small conformation of ssRNA-bound CRISPR_Csm complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cms protein Csm2, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), ...
Authors:Zhang, K, Pintilie, G, Li, S, Zhu, Y, Chiu, W, Huang, Z.
Deposit date:2019-01-31
Release date:2019-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Coupling of ssRNA cleavage with DNase activity in type III-A CRISPR-Csm revealed by cryo-EM and biochemistry.
Cell Res., 29, 2019
6NUE
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BU of 6nue by Molmil
Small conformation of apo CRISPR_Csm complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cms protein Csm2, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), ...
Authors:Zhang, K, Pintilie, G, Li, S, Zhu, Y, Chiu, W, Huang, Z.
Deposit date:2019-01-31
Release date:2019-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Coupling of ssRNA cleavage with DNase activity in type III-A CRISPR-Csm revealed by cryo-EM and biochemistry.
Cell Res., 29, 2019

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