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1SPS
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BU of 1sps by Molmil
BINDING OF A HIGH AFFINITY PHOSPHOTYROSYL PEPTIDE TO THE SRC SH2 DOMAIN: CRYSTAL STRUCTURES OF THE COMPLEXED AND PEPTIDE-FREE FORMS
Descriptor: PEPTIDE YEEI, SRC SH2 DOMAIN
Authors:Waksman, G, Kuriyan, J.
Deposit date:1993-03-05
Release date:1994-05-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Binding of a high affinity phosphotyrosyl peptide to the Src SH2 domain: crystal structures of the complexed and peptide-free forms.
Cell(Cambridge,Mass.), 72, 1993
1SPR
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BU of 1spr by Molmil
BINDING OF A HIGH AFFINITY PHOSPHOTYROSYL PEPTIDE TO THE SRC SH2 DOMAIN: CRYSTAL STRUCTURES OF THE COMPLEXED AND PEPTIDE-FREE FORMS
Descriptor: PHOSPHATE ION, SRC TYROSINE KINASE SH2 DOMAIN
Authors:Waksman, G, Kuriyan, J.
Deposit date:1993-03-05
Release date:1994-05-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Binding of a high affinity phosphotyrosyl peptide to the Src SH2 domain: crystal structures of the complexed and peptide-free forms.
Cell(Cambridge,Mass.), 72, 1993
1SHA
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BU of 1sha by Molmil
CRYSTAL STRUCTURE OF THE PHOSPHOTYROSINE RECOGNITION DOMAIN SH2 OF V-SRC COMPLEXED WITH TYROSINE-PHOSPHORYLATED PEPTIDES
Descriptor: PHOSPHOPEPTIDE A, V-SRC SH2 DOMAIN
Authors:Waksman, G, Kuriyan, J.
Deposit date:1992-08-18
Release date:1993-10-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides.
Nature, 358, 1992
1TDF
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BU of 1tdf by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE DURING CATALYSIS
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, THIOREDOXIN REDUCTASE
Authors:Waksman, G, Krishna, T.S.R, Williams Junior, C.H, Kuriyan, J.
Deposit date:1994-01-14
Release date:1994-11-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Escherichia coli thioredoxin reductase refined at 2 A resolution. Implications for a large conformational change during catalysis.
J.Mol.Biol., 236, 1994
1TDE
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BU of 1tde by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE DURING CATALYSIS
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, THIOREDOXIN REDUCTASE
Authors:Waksman, G, Krishna, T.S.R, Williams Junior, C.H, Kuriyan, J.
Deposit date:1994-01-14
Release date:1994-11-30
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Escherichia coli thioredoxin reductase refined at 2 A resolution. Implications for a large conformational change during catalysis.
J.Mol.Biol., 236, 1994
1SHB
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BU of 1shb by Molmil
CRYSTAL STRUCTURE OF THE PHOSPHOTYROSINE RECOGNITION DOMAIN SH2 OF V-SRC COMPLEXED WITH TYROSINE-PHOSPHORYLATED PEPTIDES
Descriptor: PHOSPHOPEPTIDE B, V-SRC SH2 DOMAIN
Authors:Waksman, G, Kuriyan, J.
Deposit date:1992-08-18
Release date:1993-10-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides.
Nature, 358, 1992
3U4K
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BU of 3u4k by Molmil
Crystal structure of the receptor binding domain of plasmid-born adhesin MrkD1P of Klebsiella pneumoniae
Descriptor: Fimbria adhesin protein
Authors:Rego, A.T, Waksman, G.
Deposit date:2011-10-09
Release date:2012-09-26
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the MrkD1P receptor binding domain of Klebsiella pneumoniae and identification of the human collagen V binding interface.
Mol.Microbiol., 86, 2012
5FLU
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BU of 5flu by Molmil
Structure of a Chaperone-Usher pilus reveals the molecular basis of rod uncoilin
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN
Authors:Hospenthal, M.K, Redzej, A, Dodson, K, Ukleja, M, Frenz, B, Hultgren, S.J, DiMaio, F, Egelman, E.H, Waksman, G.
Deposit date:2015-10-28
Release date:2016-01-13
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of a Chaperone-Usher Pilus Reveals the Molecular Basis of Rod Uncoiling.
Cell(Cambridge,Mass.), 164, 2016
3KTQ
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BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
1N12
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BU of 1n12 by Molmil
Crystal structure of the PapE (N-terminal-deleted) pilus subunit bound to a peptide corresponding to the N-terminal extension of the PapK pilus subunit (residues 1-11) from uropathogenic E. coli
Descriptor: Peptide corresponding to the N-terminal extension of protein PapK, mature Fimbrial protein PapE
Authors:Sauer, F.G, Pinkner, J.S, Waksman, G, Hultgren, S.J.
Deposit date:2002-10-16
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Chaperone priming of pilus subunits facilitates a topological transition that drives fiber formation
Cell(Cambridge,Mass.), 111, 2002
1N0L
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BU of 1n0l by Molmil
Crystal structure of the PapD chaperone (C-terminally 6x histidine-tagged) bound to the PapE pilus subunit (N-terminal-deleted) from uropathogenic E. coli
Descriptor: Chaperone protein PapD, mature Fimbrial protein PapE
Authors:Sauer, F.G, Pinkner, J.S, Waksman, G, Hultgren, S.J.
Deposit date:2002-10-14
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Chaperone priming of pilus subunits facilitates a topological transition that drives fiber formation
Cell(Cambridge,Mass.), 111, 2002
7Q1V
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BU of 7q1v by Molmil
Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwG protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-10-21
Release date:2022-06-22
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (6.18 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
6Y7S
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BU of 6y7s by Molmil
2.85 A cryo-EM structure of the in vivo assembled type 1 pilus rod
Descriptor: Type-1 fimbrial protein, A chain
Authors:Zyla, D, Hospenthal, M, Waksman, G, Glockshuber, R.
Deposit date:2020-03-02
Release date:2021-03-31
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:The assembly platform FimD is required to obtain the most stable quaternary structure of type 1 pili.
Nat Commun, 15, 2024
6QCM
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BU of 6qcm by Molmil
Cryo em structure of the Listeria stressosome
Descriptor: RsbR protein, RsbR protein,RsbR protein, RsbS protein
Authors:Williams, A.H, Redzej, A, Waksman, G, Cossart, P.
Deposit date:2018-12-28
Release date:2019-08-21
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.21 Å)
Cite:The cryo-electron microscopy supramolecular structure of the bacterial stressosome unveils its mechanism of activation.
Nat Commun, 10, 2019
8PSV
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BU of 8psv by Molmil
2.7 A cryo-EM structure of in vitro assembled type 1 pilus rod
Descriptor: Type-1 fimbrial protein, A chain
Authors:Hospenthal, M, Zyla, D, Glockshuber, R, Waksman, G.
Deposit date:2023-07-13
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:The assembly platform FimD is required to obtain the most stable quaternary structure of type 1 pili.
Nat Commun, 15, 2024
8PTU
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BU of 8ptu by Molmil
2.5 A cryo-EM structure of the in vitro FimD-catalyzed assembly of type 1 pilus rod
Descriptor: Type-1 fimbrial protein, A chain
Authors:Zyla, D, Hospenthal, M, Glockshuber, R, Waksman, G.
Deposit date:2023-07-14
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:The assembly platform FimD is required to obtain the most stable quaternary structure of type 1 pili.
Nat Commun, 15, 2024
6GYB
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BU of 6gyb by Molmil
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri
Descriptor: VirB10 protein, VirB7, VirB9 protein
Authors:Sgro, G.G, Costa, T.R.D, Farah, C.S, Waksman, G.
Deposit date:2018-06-28
Release date:2018-10-24
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri.
Nat Microbiol, 3, 2018
5CDW
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BU of 5cdw by Molmil
Crystal Structure Analysis of a mutant Grb2 SH2 domain (W121G) with a pYVNV peptide
Descriptor: Growth factor receptor-bound protein 2, SER-PTR-VAL-ASN-VAL-GLN
Authors:Papaioannou, D, Geibel, S, Kunze, M, Kay, C, Waksman, G.
Deposit date:2015-07-05
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Structural and biophysical investigation of the interaction of a mutant Grb2 SH2 domain (W121G) with its cognate phosphopeptide.
Protein Sci., 25, 2016
1YMP
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BU of 1ymp by Molmil
The Crystal Structure of a Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve an Ankyrin Fold
Descriptor: Notch 1 protein
Authors:Lubman, O.Y, Kopan, R, Waksman, G, Korolev, S.
Deposit date:2005-01-21
Release date:2005-05-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of a partial mouse Notch-1 ankyrin domain: repeats 4 through 7 preserve an ankyrin fold.
Protein Sci., 14, 2005
3ZBI
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BU of 3zbi by Molmil
Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
Descriptor: TRAF PROTEIN, TRAN PROTEIN, TRAO PROTEIN
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-10
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
3Q48
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BU of 3q48 by Molmil
Crystal structure of Pseudomonas aeruginosa CupB2 chaperone
Descriptor: Chaperone CupB2
Authors:Cai, X, Wang, R, Filloux, A, Waksman, G, Meng, G.
Deposit date:2010-12-23
Release date:2011-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional characterization of Pseudomonas aeruginosa CupB chaperones
Plos One, 6, 2011
3RFZ
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BU of 3rfz by Molmil
Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate
Descriptor: Chaperone protein fimC, Outer membrane usher protein, type 1 fimbrial synthesis, ...
Authors:Phan, G, Remaut, H, Lebedev, A, Geibel, S, Waksman, G.
Deposit date:2011-04-07
Release date:2011-06-01
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the FimD usher bound to its cognate FimC-FimH substrate.
Nature, 474, 2011
2YPW
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BU of 2ypw by Molmil
Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex
Descriptor: TRAO
Authors:Rivera-Calzada, A, Fronzes, R, Savva, C.G, Chandran, V, Lian, P.W, Laeremans, T, Pardon, E, Steyaert, J, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2012-11-02
Release date:2013-04-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (12.4 Å)
Cite:Structure of a Bacterial Type Iv Secretion Core Complex at Subnanometre Resolution.
Embo J., 32, 2013
2XG4
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BU of 2xg4 by Molmil
E. coli P pilus chaperone-subunit complex PapD-PapH bound to pilus biogenesis inhibitor, pilicide 2c
Descriptor: (3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-YLMETHYL)-7-(1-NAPHTHYLMETHYL)-5-OXO-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID, CHAPERONE PROTEIN PAPD, COBALT (II) ION, ...
Authors:Remaut, H, Phan, G, Buelens, F, Chorell, E, Pinkner, J.S, Edvinsson, S, Almqvist, F, Hultgren, S.J, Waksman, G.
Deposit date:2010-05-30
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design and Synthesis of C-2 Substituted Thiazolo and Dihydrothiazolo Ring-Fused 2-Pyridones: Pilicides with Increased Antivirulence Activity.
J.Med.Chem., 53, 2010
2XG5
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BU of 2xg5 by Molmil
E. coli P pilus chaperone-subunit complex PapD-PapH bound to pilus biogenesis inhibitor, pilicide 5d
Descriptor: (2R)-2-[5-CYCLOPROPYL-6-(HYDROXYSULFANYL)-4-(NAPHTHALEN-1-YLMETHYL)-2-OXOPYRIDIN-1(2H)-YL]-3-PHENYLPROPANOIC ACID, (2R,3R)-8-CYCLOPROPYL-7-(NAPHTHALEN-1-YLMETHYL)-5-OXO-2-PHENYL-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID, CHAPERONE PROTEIN PAPD, ...
Authors:Remaut, H, Phan, G, Buelens, F, Chorell, E, Pinkner, J.S, Edvinsson, S, Almqvist, F, Hultgren, S.J, Waksman, G.
Deposit date:2010-05-30
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of C-2 Substituted Thiazolo and Dihydrothiazolo Ring-Fused 2-Pyridones: Pilicides with Increased Antivirulence Activity.
J.Med.Chem., 53, 2010

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