Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7AYG
DownloadVisualize
BU of 7ayg by Molmil
oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative oxalyl-CoA decarboxylase (Oxc, ...
Authors:Pfister, P, Burgener, S, Nattermann, M, Zarzycki, J, Erb, T.J.
Deposit date:2020-11-12
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering a Highly Efficient Carboligase for Synthetic One-Carbon Metabolism.
Acs Catalysis, 11, 2021
7B2E
DownloadVisualize
BU of 7b2e by Molmil
quadruple mutant of oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative oxalyl-CoA decarboxylase (Oxc, ...
Authors:Pfister, P, Burgener, S, Nattermann, M, Zarzycki, J, Erb, T.J.
Deposit date:2020-11-26
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Engineering a Highly Efficient Carboligase for Synthetic One-Carbon Metabolism.
Acs Catalysis, 11, 2021
6QKB
DownloadVisualize
BU of 6qkb by Molmil
Crystal structure of the beta-hydroxyaspartate aldolase of Paracoccus denitrificans
Descriptor: D-3-hydroxyaspartate aldolase, MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Zarzycki, J, Schada von Borzyskowski, L, Gilardet, A, Erb, T.J.
Deposit date:2019-01-28
Release date:2019-08-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Marine Proteobacteria metabolize glycolate via the beta-hydroxyaspartate cycle.
Nature, 575, 2019
6RQA
DownloadVisualize
BU of 6rqa by Molmil
Crystal structure of the iminosuccinate reductase of Paracoccus denitrificans in complex with NAD+
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TERBIUM(III) ION, Tb-Xo4, ...
Authors:Zarzycki, J, Severi, F, Schada von Borzyskowski, L, Erb, T.J.
Deposit date:2019-05-15
Release date:2019-08-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Marine Proteobacteria metabolize glycolate via the beta-hydroxyaspartate cycle.
Nature, 575, 2019
4W99
DownloadVisualize
BU of 4w99 by Molmil
Apo-structure of the Y79F,W322E-double mutant of Etr1p
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial, ...
Authors:Quade, N, Voegeli, B, Rosenthal, R, Erb, T.J.
Deposit date:2014-08-27
Release date:2015-03-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The use of ene adducts to study and engineer enoyl-thioester reductases.
Nat.Chem.Biol., 11, 2015
7QSZ
DownloadVisualize
BU of 7qsz by Molmil
Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex with substitution e170N
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QT1
DownloadVisualize
BU of 7qt1 by Molmil
Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitution e170N
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit, ...
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QSV
DownloadVisualize
BU of 7qsv by Molmil
L8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of Form I'' and Form I RubisCOs
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QSX
DownloadVisualize
BU of 7qsx by Molmil
Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QSW
DownloadVisualize
BU of 7qsw by Molmil
L8S8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of SSU-bearing Form I RubisCOs
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit, ...
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QVI
DownloadVisualize
BU of 7qvi by Molmil
Fiber-forming RubisCO derived from ancestral sequence reconstruction and rational engineering
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit
Authors:Schulz, L, Zarzycki, J, Prinz, S, Schuller, J.M, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-21
Release date:2022-10-12
Last modified:2022-10-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
7QSY
DownloadVisualize
BU of 7qsy by Molmil
Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, RubisCO large subunit, ...
Authors:Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
Deposit date:2022-01-14
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Science, 378, 2022
8BPP
DownloadVisualize
BU of 8bpp by Molmil
crystal structure of N-ethylmaleimide reductase (nemA) from Escherichia coli
Descriptor: FLAVIN MONONUCLEOTIDE, N-ethylmaleimide reductase
Authors:Pfister, P, Tinzl, M, Erb, T.
Deposit date:2022-11-17
Release date:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Development of the Biocatalytic Reductive Aldol Reaction
To Be Published
8BPQ
DownloadVisualize
BU of 8bpq by Molmil
crystal structure of N-ethylmaleimide reductase with mutation Y187F (nemA Y187F) from Escherichia coli
Descriptor: FLAVIN MONONUCLEOTIDE, N-ethylmaleimide reductase, Tb-Xo4
Authors:Pfister, P, Tinzl, M, Erb, T.
Deposit date:2022-11-17
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Development of the Biocatalytic Reductive Aldol Reaction
To Be Published
5JFL
DownloadVisualize
BU of 5jfl by Molmil
Crystal structure of Rhodopseudomonas palustris propionaldehyde dehydrogenase with bound NAD+
Descriptor: Aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zarzycki, J, Sutter, M, Kerfeld, C.A.
Deposit date:2016-04-19
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment.
Sci Rep, 7, 2017
6ESQ
DownloadVisualize
BU of 6esq by Molmil
Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA
Descriptor: CHLORIDE ION, COENZYME A, HydroxyMethylGlutaryl-CoA synthase, ...
Authors:Voegeli, B, Engilberge, S, Girard, E, Riobe, F, Maury, O, Erb, J.T, Shima, S, Wagner, T.
Deposit date:2017-10-24
Release date:2018-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4F18
DownloadVisualize
BU of 4f18 by Molmil
Subatomic resolution structure of a high affinity periplasmic phosphate-binding protein (PfluDING) bound with arsenate at pH 8.5
Descriptor: Putative alkaline phosphatase, hydrogen arsenate
Authors:Elias, M, Wellner, A, Goldin, K, Chabriere, E, Tawfik, D.S.
Deposit date:2012-05-06
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:The molecular basis of phosphate discrimination in arsenate-rich environments.
Nature, 491, 2012
4F19
DownloadVisualize
BU of 4f19 by Molmil
Subatomic resolution structure of a high affinity periplasmic phosphate-binding protein (PfluDING) bound with arsenate at pH 4.5
Descriptor: Putative alkaline phosphatase, hydrogen arsenate
Authors:Elias, M, Wellner, A, Goldin, K, Chabriere, E, Tawfik, D.S.
Deposit date:2012-05-06
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:The molecular basis of phosphate discrimination in arsenate-rich environments.
Nature, 491, 2012
4F1U
DownloadVisualize
BU of 4f1u by Molmil
Subatomic resolution structure of a high affinity periplasmic phosphate-binding protein (PfluDING) bound with phosphate at pH 4.5
Descriptor: 1,2-ETHANEDIOL, HYDROGENPHOSPHATE ION, Putative alkaline phosphatase, ...
Authors:Liebschner, D, Elias, M, Tawfik, D.S, Moniot, S, Fournier, B, Scott, K, Jelsch, C, Guillot, B, Lecomte, C, Chabriere, E.
Deposit date:2012-05-07
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:The molecular basis of phosphate discrimination in arsenate-rich environments.
Nature, 491, 2012
4F1V
DownloadVisualize
BU of 4f1v by Molmil
Subatomic resolution structure of a high affinity periplasmic phosphate-binding protein (PfluDING) bound with phosphate at pH 8.5
Descriptor: HYDROGENPHOSPHATE ION, Putative alkaline phosphatase, SULFATE ION
Authors:Liebschner, D, Elias, M, Tawfik, D.S, Moniot, S, Fournier, B, Scott, K, Jelsch, C, Guillot, B, Lecomte, C, Chabriere, E.
Deposit date:2012-05-07
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:The molecular basis of phosphate discrimination in arsenate-rich environments.
Nature, 491, 2012
8BEI
DownloadVisualize
BU of 8bei by Molmil
Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
Descriptor: Citrate synthase
Authors:Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
Deposit date:2022-10-21
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Evolution of a protein Sierpinski fractal
To Be Published
3HZZ
DownloadVisualize
BU of 3hzz by Molmil
2.4 Angstrom Crystal Structure of Streptomyces collinus crotonyl CoA carboxylase/reductase
Descriptor: Crotonyl CoA reductase, SULFATE ION
Authors:Scarsdale, J.N, Musayev, F.N, Wright, H.T.
Deposit date:2009-06-24
Release date:2010-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Streptomycs collinus crotonyl COA carboxylase/reductase
To be Published
8AN1
DownloadVisualize
BU of 8an1 by Molmil
Structure of a first level Sierpinski triangle formed by a citrate synthase
Descriptor: Citrate synthase
Authors:Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
Deposit date:2022-08-04
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Evolution of a protein Sierpinski fractal
To Be Published
8BP7
DownloadVisualize
BU of 8bp7 by Molmil
Citrate-bound hexamer of Synechococcus elongatus citrate synthase
Descriptor: CITRIC ACID, Citrate synthase, MAGNESIUM ION, ...
Authors:Mais, C.-N, Sendker, F, Bange, G.
Deposit date:2022-11-16
Release date:2024-04-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
5JFM
DownloadVisualize
BU of 5jfm by Molmil
Crystal structure of Rhodopseudomonas palustris propionaldehyde dehydrogenase with bound propionyl-CoA
Descriptor: Aldehyde dehydrogenase, COENZYME A, propionyl Coenzyme A
Authors:Zarzycki, J, Sutter, M, Kerfeld, C.A.
Deposit date:2016-04-19
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.516 Å)
Cite:In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment.
Sci Rep, 7, 2017

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon