8ODZ
Cryo-EM structure of a pre-dimerized murine IL-12 complete extracellular signaling complex (Class 1).
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Interleukin-12 subunit alpha | polymer | 231 | 25927.5 | 1 | UniProt (P43431) Pfam (PF03039) In PDB | Mus musculus (house mouse) | IL-12A,Cytotoxic lymphocyte maturation factor 35 kDa subunit,CLMF p35,IL-12 subunit p35 |
2 | B | Interleukin-12 subunit beta | polymer | 313 | 35837.3 | 1 | UniProt (P43432) Pfam (PF10420) In PDB | Mus musculus (house mouse) | IL-12B,Cytotoxic lymphocyte maturation factor 40 kDa subunit,CLMF p40,IL-12 subunit p40 |
3 | C | Interleukin-12 receptor subunit beta-1,Death-associated protein kinase 1 | polymer | 572 | 63789.2 | 1 | UniProt (Q60837) UniProt (P53355) Pfam (PF00041) UniProt (by SIFTS) (Q80YE7) In PDB | Mus musculus (house mouse) | IL-12 receptor subunit beta-1,IL-12R subunit beta-1,IL-12R-beta-1,IL-12 receptor beta component,DAP kinase 1 |
4 | D | Interleukin-12 receptor subunit beta-2,Calmodulin-1 | polymer | 769 | 85723.3 | 1 | UniProt (P97378) UniProt (P0DP23) Pfam (PF06328) Pfam (PF00041) Pfam (PF13499) UniProt (by SIFTS) (P0DP26) In PDB | Mus musculus (house mouse) | IL-12 receptor subunit beta-2,IL-12R subunit beta-2,IL-12R-beta-2,IL-12RB2 |
5 | E | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
6 | C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
7 | water | water | 18.0 | 1 | Chemie (HOH) |
Sequence modifications
A: 23 - 215 (UniProt: P43431)
C: 20 - 561 (UniProt: Q60837)
C: 572 - 591 (UniProt: P53355)
D: 24 - 637 (UniProt: P97378)
D: 648 - 792 (UniProt: P0DP23)
PDB | External Database | Details |
---|---|---|
Gly 216 | - | expression tag |
Thr 217 | - | expression tag |
Ser 218 | - | expression tag |
Asp 219 | - | expression tag |
Glu 220 | - | expression tag |
Val 221 | - | expression tag |
Asp 222 | - | expression tag |
Gly 223 | - | expression tag |
Gly 224 | - | expression tag |
Ser 225 | - | expression tag |
Gly 226 | - | expression tag |
Gly 227 | - | expression tag |
Ser 228 | - | expression tag |
Gly 229 | - | expression tag |
Leu 230 | - | expression tag |
Asn 231 | - | expression tag |
Asp 232 | - | expression tag |
Ile 233 | - | expression tag |
Phe 234 | - | expression tag |
Glu 235 | - | expression tag |
Ala 236 | - | expression tag |
Gln 237 | - | expression tag |
Lys 238 | - | expression tag |
Ile 239 | - | expression tag |
Glu 240 | - | expression tag |
Trp 241 | - | expression tag |
His 242 | - | expression tag |
Glu 243 | - | expression tag |
Gly 244 | - | expression tag |
Arg 245 | - | expression tag |
Thr 246 | - | expression tag |
Lys 247 | - | expression tag |
His 248 | - | expression tag |
His 249 | - | expression tag |
His 250 | - | expression tag |
His 251 | - | expression tag |
His 252 | - | expression tag |
His 253 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 562 | - | linker |
Thr 563 | - | linker |
Gly 564 | - | linker |
Gly 565 | - | linker |
Ser 566 | - | linker |
Gly 567 | - | linker |
Gly 568 | - | linker |
Ser 569 | - | linker |
Gly 570 | - | linker |
Gly 571 | - | linker |
D: 24 - 637 (UniProt: P97378)
PDB | External Database | Details |
---|---|---|
Gly 638 | - | linker |
Thr 639 | - | linker |
Gly 640 | - | linker |
Gly 641 | - | linker |
Ser 642 | - | linker |
Gly 643 | - | linker |
Gly 644 | - | linker |
Ser 645 | - | linker |
Gly 646 | - | linker |
Gly 647 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 211277.3 | |
Branched | Number of molecules | 1 |
Total formula weight | 748.7 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 1106.0 | |
All* | Total formula weight | 213132.0 |