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8FKR

Human nucleolar pre-60S ribosomal subunit (State B1)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BA60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL11
2L15.8S rRNApolymer15750449.81GenBank (555853)Homo sapiens (human)
3L2ITS2 rRNApolymer1167376425.31GenBank (86475748)Homo sapiens (human)
4L328S rRNApolymer50701640222.11GenBank (86475748)Homo sapiens (human)
5L660S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB
Homo sapiens (human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
6L760S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
7L860S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
8L960S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL15
9LA60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
10LB60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL18
11LC60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL20
12LE60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL21
13LG60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
14LH60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL23
15LI60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL24
16LK60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL15
17LN60S ribosomal protein L3polymer40346224.11UniProt (P39023)
Pfam (PF00297)
In PDB
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
18LQ60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL32
19LS60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL29
20LT60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
21LU60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL36
22LW60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB
Homo sapiens (human)G1.16
23NBGuanine nucleotide-binding protein-like 3polymer54962098.21UniProt (Q9BVP2)
Pfam (PF08701)
Pfam (PF01926)
In PDB
Homo sapiens (human)E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin
24NESurfeit locus protein 6polymer36141553.81UniProt (O75683)
Pfam (PF04935)
In PDB
Homo sapiens (human)
25NFRibosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
In PDB
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
26NGRRP15-like proteinpolymer28231539.31UniProt (Q9Y3B9)
Pfam (PF07890)
In PDB
Homo sapiens (human)Ribosomal RNA-processing protein 15
27NMProtein MAK16 homologpolymer30035469.71UniProt (Q9BXY0)
Pfam (PF01778)
Pfam (PF04874)
In PDB
Homo sapiens (human)NNP78,Protein RBM13
28NNSuppressor of SWI4 1 homologpolymer47353292.11UniProt (Q9NQ55)
Pfam (PF04427)
In PDB
Homo sapiens (human)Ssf-1,Brix domain-containing protein 3,Peter Pan homolog
29NORibosomal RNA processing protein 1 homolog Apolymer46152927.31UniProt (P56182)
Pfam (PF05997)
In PDB
Homo sapiens (human)Novel nuclear protein 1,NNP-1,Nucleolar protein Nop52,RRP1-like protein
30NQWD repeat-containing protein 74polymer38542501.21UniProt (Q6RFH5)
Pfam (PF00400)
In PDB
Homo sapiens (human)NOP seven-associated protein 1
31NSRibosome production factor 1polymer34940189.01UniProt (Q9H9Y2)
Pfam (PF04427)
In PDB
Homo sapiens (human)Brix domain-containing protein 5,Ribosome biogenesis protein RPF1
32SA60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
33SC60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
34SD60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL30
35SE60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
36SG60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL6
37SHMKI67 FHA domain-interacting nucleolar phosphoproteinpolymer29334285.31UniProt (Q9BYG3)
Pfam (PF00076)
Pfam (PF12196)
In PDB
Homo sapiens (human)Nucleolar phosphoprotein Nopp34,Nucleolar protein interacting with the FHA domain of pKI-67,hNIFK
38SI60S ribosomal protein L7-like 1polymer25529730.41UniProt (Q6DKI1)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL30-like 1
39SJpre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3polymer84796726.91UniProt (Q8IY81)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
In PDB
Homo sapiens (human)Protein ftsJ homolog 3,Putative rRNA methyltransferase 3
40SKEukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
In PDB
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
41SLRibosomal L1 domain-containing protein 1polymer49055089.81UniProt (O76021)
Pfam (PF00687)
In PDB
Homo sapiens (human)CATX-11,Cellular senescence-inhibited gene protein,Protein PBK1
42SMPescadillo homologpolymer58868114.71UniProt (O00541)
Pfam (PF06732)
Pfam (PF16589)
In PDB
Homo sapiens (human)
43SNProbable rRNA-processing protein EBP2polymer30634925.11UniProt (Q99848)
Pfam (PF05890)
In PDB
Homo sapiens (human)EBNA1-binding protein 2,Nucleolar protein p40
44SORibosome biogenesis protein BRX1 homologpolymer35341483.51UniProt (Q8TDN6)
Pfam (PF04427)
In PDB
Homo sapiens (human)Brix domain-containing protein 2
45SQmRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
In PDB
Homo sapiens (human)Ribosome assembly factor MRTO4
46SRGTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB,Nucleolar GTP-binding protein 1
47SSRibosome biogenesis protein BOP1polymer74683901.51UniProt (Q14137)
Pfam (PF08145)
Pfam (PF00400)
In PDB
Homo sapiens (human)Block of proliferation 1 protein
48STRibosome biogenesis regulatory protein homologpolymer36541278.51UniProt (Q15050)
Pfam (PF04939)
In PDB
Homo sapiens (human)
49SVProbable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
In PDB
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
50SWATP-dependent RNA helicase DDX18polymer67075526.81UniProt (Q9NVP1)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF13959)
In PDB
Homo sapiens (human)DEAD box protein 18,Myc-regulated DEAD box protein,MrDb
51SZNucleolar protein 16polymer17821234.51UniProt (Q9Y3C1)
Pfam (PF09420)
In PDB
Homo sapiens (human)HBV pre-S2 trans-regulated protein 3
52L1, L3, L2, SA, L9...MAGNESIUM IONnon-polymer24.354Chemie (MG)
53LW, SVZINC IONnon-polymer65.42Chemie (ZN)
54NMIRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
55SRGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
56SRPOTASSIUM IONnon-polymer39.11Chemie (K)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains51
Total formula weight3724233.6
Non-Polymers*Number of molecules59
Total formula weight2277.2
All*Total formula weight3726510.8
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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