8A5I
Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | 50S ribosomal protein L28 | polymer | 62 | 7010.4 | 1 | UniProt (P66144) Pfam (PF00830) In PDB | Listeria monocytogenes EGD-e | |
| 2 | 2 | 50S ribosomal protein L29 | polymer | 63 | 7414.5 | 1 | UniProt (P66166) Pfam (PF00831) In PDB | Listeria monocytogenes EGD-e | |
| 3 | 3 | 50S ribosomal protein L30 | polymer | 59 | 6504.8 | 1 | UniProt (Q927M5) Pfam (PF00327) In PDB | Listeria monocytogenes EGD-e | |
| 4 | 4 | 50S ribosomal protein L31 type B | polymer | 81 | 9274.4 | 1 | UniProt (P0A485) Pfam (PF01197) In PDB | Listeria monocytogenes EGD-e | |
| 5 | 5 | 50S ribosomal protein L32-2 | polymer | 57 | 6534.6 | 1 | UniProt (P66207) Pfam (PF01783) In PDB | Listeria monocytogenes EGD-e | |
| 6 | 6 | 50S ribosomal protein L33 1 | polymer | 49 | 6021.0 | 1 | UniProt (P66219) Pfam (PF00471) In PDB | Listeria monocytogenes EGD-e | |
| 7 | 7 | 50S ribosomal protein L34 | polymer | 44 | 5319.5 | 1 | UniProt (P66248) Pfam (PF00468) In PDB | Listeria monocytogenes EGD-e | |
| 8 | 8 | 50S ribosomal protein L35 | polymer | 66 | 7746.4 | 1 | UniProt (P0A491) Pfam (PF01632) In PDB | Listeria monocytogenes EGD-e | |
| 9 | 9 | 50S ribosomal protein L36 | polymer | 37 | 4336.5 | 1 | UniProt (P66290) Pfam (PF00444) In PDB | Listeria monocytogenes EGD-e | |
| 10 | A | 23S ribosomal RNA | polymer | 2931 | 950710.4 | 1 | GenBank (523836572) | Listeria monocytogenes EGD-e | |
| 11 | B | 5S ribosomal RNA | polymer | 114 | 36716.7 | 1 | GenBank (1182963193) | Listeria monocytogenes EGD-e | |
| 12 | G | 50S ribosomal protein L2 | polymer | 277 | 30568.4 | 1 | UniProt (P60426) Pfam (PF00181) Pfam (PF03947) In PDB | Listeria monocytogenes EGD-e | |
| 13 | H | 50S ribosomal protein L3 | polymer | 209 | 22863.5 | 1 | UniProt (Q8Y440) Pfam (PF00297) In PDB | Listeria monocytogenes EGD-e | |
| 14 | I | 50S ribosomal protein L4 | polymer | 207 | 22640.3 | 1 | UniProt (P61055) Pfam (PF00573) In PDB | Listeria monocytogenes EGD-e | |
| 15 | J | 50S ribosomal protein L5 | polymer | 179 | 20023.2 | 1 | UniProt (Q927L9) Pfam (PF00281) Pfam (PF00673) In PDB | Listeria monocytogenes EGD-e | |
| 16 | K | 50S ribosomal protein L6 | polymer | 178 | 19434.4 | 1 | UniProt (Q8Y444) Pfam (PF00347) In PDB | Listeria monocytogenes EGD-e | |
| 17 | M | 50S ribosomal protein L13 | polymer | 145 | 16227.7 | 1 | UniProt (Q8Y458) Pfam (PF00572) In PDB | Listeria monocytogenes EGD-e | |
| 18 | N | 50S ribosomal protein L14 | polymer | 122 | 13248.4 | 1 | UniProt (Q927L7) Pfam (PF00238) In PDB | Listeria monocytogenes EGD-e | |
| 19 | O | 50S ribosomal protein L15 | polymer | 146 | 15812.1 | 1 | UniProt (Q8Y447) Pfam (PF00828) In PDB | Listeria monocytogenes EGD-e | |
| 20 | P | 50S ribosomal protein L16 | polymer | 144 | 16171.0 | 1 | UniProt (Q927L4) Pfam (PF00252) In PDB | Listeria monocytogenes EGD-e | |
| 21 | Q | 50S ribosomal protein L17 | polymer | 135 | 15246.8 | 1 | UniProt (Q8Y450) Pfam (PF01196) In PDB | Listeria monocytogenes EGD-e | |
| 22 | R | 50S ribosomal protein L18 | polymer | 119 | 13121.9 | 1 | UniProt (Q8Y445) Pfam (PF00861) In PDB | Listeria monocytogenes EGD-e | |
| 23 | S | 50S ribosomal protein L19 | polymer | 114 | 13146.5 | 1 | UniProt (O53083) Pfam (PF01245) In PDB | Listeria monocytogenes EGD-e | |
| 24 | T | 50S ribosomal protein L20 | polymer | 119 | 13719.4 | 1 | UniProt (P66103) Pfam (PF00453) In PDB | Listeria monocytogenes EGD-e | |
| 25 | U | 50S ribosomal protein L21 | polymer | 102 | 11234.0 | 1 | UniProt (Q8Y6Y9) Pfam (PF00829) In PDB | Listeria monocytogenes EGD-e | |
| 26 | V | 50S ribosomal protein L22 | polymer | 118 | 12895.9 | 1 | UniProt (Q927L2) Pfam (PF00237) In PDB | Listeria monocytogenes EGD-e | |
| 27 | W | 50S ribosomal protein L23 | polymer | 94 | 10935.7 | 1 | UniProt (Q8Y441) Pfam (PF00276) In PDB | Listeria monocytogenes EGD-e | |
| 28 | X | 50S ribosomal protein L24 | polymer | 103 | 11205.3 | 1 | UniProt (A0A0P6T4V2) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q8Y443) In PDB | Listeria monocytogenes EGD-e | |
| 29 | Z | 50S ribosomal protein L27 | polymer | 96 | 10571.9 | 1 | UniProt (P66125) Pfam (PF01016) In PDB | Listeria monocytogenes EGD-e | |
| 30 | 5, 9 | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 31 | A | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 32 | A, G, H, O | MAGNESIUM ION | non-polymer | 24.3 | 165 | Chemie (MG) | |||
| 33 | A | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) | |||
| 34 | A | LINCOMYCIN | non-polymer | 406.5 | 1 | Chemie (3QB) | |||
| 35 | P | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 36 | water | water | 18.0 | 1381 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 29 |
| Total formula weight | 1336655.5 | |
| Non-Polymers* | Number of molecules | 172 |
| Total formula weight | 4908.3 | |
| All* | Total formula weight | 1341563.9 |
