Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7AR7

Cryo-EM structure of Arabidopsis thaliana complex-I (open conformation)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ANADH-ubiquinone oxidoreductase chain 3polymer11913941.41UniProt (P92533)
Pfam (PF00507)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 3
2BNADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer15717794.71UniProt (Q42577)
Pfam (PF01058)
In PDB		Arabidopsis thaliana (thale cress)
3CNADH dehydrogenase [ubiquinone] iron-sulfur protein 3polymer18522366.41UniProt (Q95748)
Pfam (PF00329)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 9
4DNADH dehydrogenase [ubiquinone] iron-sulfur protein 2polymer38543889.41UniProt (P93306)
Pfam (PF00346)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 7
5ENADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer19221411.41UniProt (O22769)
Pfam (PF01257)
In PDB		Arabidopsis thaliana (thale cress)
6FNADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer43448087.21UniProt (Q9FNN5)
Pfam (PF01512)
Pfam (PF10531)
Pfam (PF10589)
In PDB		Arabidopsis thaliana (thale cress)
7GNADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrialpolymer68875100.81UniProt (Q9FGI6)
Pfam (PF10588)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
In PDB		Arabidopsis thaliana (thale cress)Protein EMBRYO DEFECTIVE 1467
8HNADH-ubiquinone oxidoreductase chain 1polymer32435888.91UniProt (P92558)
Pfam (PF00146)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 1
9INADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrialpolymer16919723.31UniProt (Q42599)
Pfam (PF12838)
In PDB		Arabidopsis thaliana (thale cress)
10JNADH-ubiquinone oxidoreductase chain 6polymer20523690.41UniProt (A0A2P2CLG1)
Pfam (PF00499)
UniProt (by SIFTS) (P60497)
In PDB		Arabidopsis thaliana (thale cress)
11KNADH-ubiquinone oxidoreductase chain 4Lpolymer889892.11UniProt (Q04614)
Pfam (PF00420)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 4L
12LNADH-ubiquinone oxidoreductase chain 5polymer61568214.81UniProt (P29388)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 5
13MNADH-ubiquinone oxidoreductase chain 4polymer48755001.51UniProt (P93313)
Pfam (PF00361)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 4
14NNADH-ubiquinone oxidoreductase chain 2polymer48854161.21UniProt (O05000)
Pfam (PF00361)
In PDB		Arabidopsis thaliana (thale cress)NADH dehydrogenase subunit 2
15PNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrialpolymer33136400.21UniProt (Q9SK66)
Pfam (PF01370)
In PDB		Arabidopsis thaliana (thale cress)
16QNADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer11913291.01UniProt (Q9FJW4)
Pfam (PF04800)
In PDB		Arabidopsis thaliana (thale cress)Protein FROSTBITE1
17RNADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer626928.01UniProt (Q9M9M6)
Pfam (PF10276)
In PDB		Arabidopsis thaliana (thale cress)
18SNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9310433.21UniProt (Q9FIJ2)
Pfam (PF05047)
In PDB		Arabidopsis thaliana (thale cress)
19TAcyl carrier protein 1, mitochondrialpolymer849526.71UniProt (P53665)
Pfam (PF00550)
In PDB		Arabidopsis thaliana (thale cress)MtACP-1,ACP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit
20UAcyl carrier protein 2, mitochondrialpolymer839232.31UniProt (O80800)
Pfam (PF00550)
In PDB		Arabidopsis thaliana (thale cress)MtACP-2,ACP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit
21VProbable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrialpolymer14016006.21UniProt (Q9FLX7)
Pfam (PF04716)
In PDB		Arabidopsis thaliana (thale cress)
22WNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer13315102.31UniProt (Q9LHI0)
In PDB		Arabidopsis thaliana (thale cress)
23XNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-Bpolymer9611036.91UniProt (Q8LGE7)
Pfam (PF06747)
In PDB		Arabidopsis thaliana (thale cress)
24ZNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-Apolymer12514150.11UniProt (Q8RWA7)
Pfam (PF06212)
In PDB		Arabidopsis thaliana (thale cress)Protein MATERNAL EFFECT EMBRYO ARREST 4
25aNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer586717.91UniProt (Q9C9Z5)
Pfam (PF15879)
In PDB		Arabidopsis thaliana (thale cress)
26bAt2g46540/F11C10.23polymer404240.21UniProt (Q9ZPY5)
In PDB		Arabidopsis thaliana (thale cress)Expressed protein,F11C10.23/F11C10.23,Fiber
27cTransmembrane proteinpolymer768811.31UniProt (Q8VZT9)
In PDB		Arabidopsis thaliana (thale cress)
28dExcitatory amino acid transporterpolymer758458.01UniProt (Q94AL6)
In PDB		Arabidopsis thaliana (thale cress)Uncharacterized protein At4g20150
29eNADH dehydrogenase [ubiquinone] iron-sulfur protein 5-Apolymer647847.91UniProt (O82238)
Pfam (PF10200)
In PDB		Arabidopsis thaliana (thale cress)
30fAt4g16450polymer10010720.31UniProt (Q84W12)
Pfam (PF10785)
In PDB		Arabidopsis thaliana (thale cress)NADH-ubiquinone oxidoreductase,Uncharacterized protein At4g16450
31gESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) proteinpolymer728319.51UniProt (Q9SLC8)
In PDB		Arabidopsis thaliana (thale cress)
32iAt1g67350polymer8510493.91UniProt (Q9FYF8)
Pfam (PF17250)
In PDB		Arabidopsis thaliana (thale cress)F1N21.17,NADH-ubiquinone oxidoreductase
33jNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2polymer515878.91UniProt (Q8LDK3)
In PDB		Arabidopsis thaliana (thale cress)
34kNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-Apolymer475337.21UniProt (O64725)
Pfam (PF08122)
In PDB		Arabidopsis thaliana (thale cress)
35lNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer465074.91UniProt (Q9FGK0)
In PDB		Arabidopsis thaliana (thale cress)
36mAT2G31490 proteinpolymer678003.21UniProt (Q9SIQ8)
In PDB		Arabidopsis thaliana (thale cress)At2g31490,Expressed protein,Neuronal acetylcholine receptor subunit alpha-5,Uncharacterized protein At2g31490
37nNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer10912864.51UniProt (Q945M1)
In PDB		Arabidopsis thaliana (thale cress)B22 subunit of eukaryotic mitochondrial complex I,Complex I-B22,AtCIB22,CI-B22,NADH-ubiquinone oxidoreductase B22 subunit
38oNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer809509.31UniProt (Q9SKC9)
Pfam (PF05676)
In PDB		Arabidopsis thaliana (thale cress)
39pNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-Bpolymer9311070.71UniProt (Q94C12)
Pfam (PF10249)
In PDB		Arabidopsis thaliana (thale cress)
40qProbable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer637325.01UniProt (Q9M9M9)
Pfam (PF05071)
In PDB		Arabidopsis thaliana (thale cress)
41rB14.5apolymer101245.51Arabidopsis thaliana (thale cress)
42uunknownpolymer302571.21Arabidopsis thaliana (thale cress)
43vUncharacterized protein At2g27730, mitochondrialpolymer303208.71UniProt (Q9ZUX4)
In PDB		Arabidopsis thaliana (thale cress)
44xGamma carbonic anhydrase-like 2, mitochondrialpolymer21423542.91UniProt (Q9SMN1)
In PDB		Arabidopsis thaliana (thale cress)AtCAL2,GAMMA CAL2
45yGamma carbonic anhydrase 2, mitochondrialpolymer26828947.91UniProt (Q9C6B3)
Pfam (PF00132)
In PDB		Arabidopsis thaliana (thale cress)AtCA2,GAMMA CA2,Transcription factor APFI
46zGamma carbonic anhydrase 1, mitochondrialpolymer23325202.61UniProt (Q9FWR5)
In PDB		Arabidopsis thaliana (thale cress)AtCA1,GAMMA CA1
47G, I, B, FIRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
48E, GFE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
49FFLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
50HUbiquinone-9non-polymer795.21Chemie (UQ9)
51I, M, NPHOSPHATIDYLETHANOLAMINEnon-polymer734.03Chemie (PTY)
52M, f(7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDEnon-polymer763.12Chemie (PC7)
53MLauryl Maltose Neopentyl Glycolnon-polymer1005.21Chemie (LMN)
54PNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
55R, yZINC IONnon-polymer65.42Chemie (ZN)
56W, nS-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioatenon-polymer540.72Chemie (8Q1)
57y(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATEnon-polymer751.01Chemie (PGT)
58z1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINEnon-polymer455.41Chemie (PSF)
59zPhosphatidylinositolnon-polymer887.11Chemie (T7X)
Sequence modifications
D: 10 - 394 (UniProt: P93306)
PDBExternal DatabaseDetails
Leu 70Ser 70conflict
Ser 227Pro 227conflict
Leu 309Ser 309conflict
Ser 363Leu 363conflict
H: 2 - 325 (UniProt: P92558)
PDBExternal DatabaseDetails
Arg 126Trp 126conflict
K: 1 - 88 (UniProt: Q04614)
PDBExternal DatabaseDetails
Leu 44Ser 44conflict
L: 1 - 615 (UniProt: P29388)
PDBExternal DatabaseDetails
Phe 91Ser 91conflict
Phe 288Ser 288conflict
Leu 537Pro 537conflict
M: 9 - 495 (UniProt: P93313)
PDBExternal DatabaseDetails
Phe 146Pro 146conflict
Leu 326Pro 326conflict
Phe 383Ser 383conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight866661.7
Non-Polymers*Number of molecules24
Total formula weight12497.7
All*Total formula weight879159.3
*Water molecules are not included.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon