6ZJ3

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	S1	18S rRNA	polymer	2315	747444.1	1		Euglena gracilis
2	S2	A-tRNA	polymer	76	24599.7	1		Euglena gracilis
3	S3	P-tRNA	polymer	76	24422.5	1		Euglena gracilis
4	S4	E-tRNA	polymer	76	24509.6	1		Euglena gracilis
5	S5	A-site tRNA	polymer	12	3756.3	1		Euglena gracilis
6	SA	Ribosomal protein eS1	polymer	249	28518.2	1		Euglena gracilis
7	SB	Ribosomal protein uS2	polymer	261	29244.5	1		Euglena gracilis
8	SC	Ribosomal protein uS3	polymer	220	24771.9	1		Euglena gracilis
9	SD	Ribosomal protein uS4	polymer	196	22460.3	1		Euglena gracilis
10	SE	Ribosomal protein eS4	polymer	271	31032.9	1		Euglena gracilis
11	SF	Ribosomal protein uS5	polymer	257	27936.9	1		Euglena gracilis
12	SG	Ribosomal protein eS6	polymer	283	31995.0	1		Euglena gracilis
13	SH	Ribosomal protein uS7	polymer	190	21473.8	1		Euglena gracilis
14	SI	Ribosomal protein eS7	polymer	200	22812.7	1		Euglena gracilis
15	SJ	Ribosomal protein uS8	polymer	130	14943.6	1		Euglena gracilis
16	SK	Ribosomal protein eS8	polymer	304	35391.4	1		Euglena gracilis
17	SL	Ribosomal protein uS9	polymer	151	17233.4	1		Euglena gracilis
18	SM	Ribosomal protein uS10	polymer	121	13344.7	1		Euglena gracilis
19	SN	Ribosomal protein eS10	polymer	152	17060.5	1		Euglena gracilis
20	SO	Ribosomal protein uS11	polymer	152	16397.9	1		Euglena gracilis
21	SP	Ribosomal protein uS12	polymer	143	15929.7	1		Euglena gracilis
22	SQ	Ribosomal protein eS12	polymer	139	15109.3	1		Euglena gracilis
23	SR	Ribosomal protein uS13	polymer	153	17632.7	1		Euglena gracilis
24	SS	Ribosomal protein uS14	polymer	55	6527.7	1		Euglena gracilis
25	ST	Ribosomal protein uS15	polymer	151	17121.2	1		Euglena gracilis
26	SU	Ribosomal protein uS17	polymer	164	19277.7	1		Euglena gracilis
27	SV	Ribosomal protein eS17	polymer	145	16399.2	1		Euglena gracilis
28	SW	Ribosomal protein uS19	polymer	150	17230.6	1		Euglena gracilis
29	SX	Ribosomal protein eS19	polymer	148	16477.2	1		Euglena gracilis
30	SY	Ribosomal protein eS21	polymer	96	10532.9	1		Euglena gracilis
31	SZ	Ribosomal protein eS24	polymer	137	16123.1	1		Euglena gracilis
32	Sa	Ribosomal protein eS25	polymer	119	13203.6	1		Euglena gracilis
33	Sb	Ribosomal protein eS26	polymer	120	13415.8	1		Euglena gracilis
34	Sc	Ribosomal protein eS27	polymer	86	9564.3	1		Euglena gracilis
35	Sd	Ribosomal protein eS28	polymer	76	8510.8	1		Euglena gracilis
36	Se	Ribosomal protein eS30	polymer	67	7194.6	1		Euglena gracilis
37	Sf	Ribosomal protein eS31	polymer	157	17859.9	1		Euglena gracilis
38	Sg	Ribosomal protein eSEug1	polymer	295	32760.0	1		Euglena gracilis
39	Sh	RACK1	polymer	317	34755.3	1		Euglena gracilis
40	LA	5.8S rRNA	polymer	163	52665.3	1		Euglena gracilis
41	LB	LSU rRNA chain 1	polymer	133	42961.7	1		Euglena gracilis
42	LC	LSU rRNA chain 2	polymer	350	113512.1	1		Euglena gracilis
43	LD	LSU rRNA chain 3	polymer	116	37346.1	1		Euglena gracilis
44	LE	LSU rRNA chain 4	polymer	698	225354.7	1		Euglena gracilis
45	LF	LSU rRNA chain 5	polymer	527	170807.7	1		Euglena gracilis
46	LG	LSU rRNA chain 6	polymer	234	75508.8	1		Euglena gracilis
47	LH	LSU rRNA chain 7	polymer	744	240661.0	1		Euglena gracilis
48	LI	LSU rRNA chain 8	polymer	617	199055.3	1		Euglena gracilis
49	LJ	LSU rRNA chain 9	polymer	164	52952.5	1		Euglena gracilis
50	LK	LSU rRNA chain 10	polymer	64	20618.3	1		Euglena gracilis
51	LL	LSU rRNA chain 11	polymer	95	30874.4	1		Euglena gracilis
52	LM	LSU rRNA chain 12	polymer	58	18673.2	1		Euglena gracilis
53	LN	LSU rRNA chain 13	polymer	86	27779.4	1		Euglena gracilis
54	LO	5S rRNA	polymer	120	38652.9	1		Euglena gracilis
55	LP	Ribosomal protein uL2	polymer	264	28784.8	1		Euglena gracilis
56	LQ	Ribosomal protein uL3	polymer	410	46348.7	1		Euglena gracilis
57	LR	Ribosomal protein uL4	polymer	375	41993.6	1		Euglena gracilis
58	LS	Ribosomal protein uL5	polymer	191	21938.7	1		Euglena gracilis
59	LT	Ribosomal protein uL6	polymer	193	22030.7	1		Euglena gracilis
60	LU	Ribosomal protein eL6	polymer	195	22615.9	1		Euglena gracilis
61	LV	60S ribosomal protein L7a	polymer	295	32999.2	1	UniProt (Q4VH13) Pfam (PF01248) In PDB	Euglena gracilis
62	LW	Ribosomal protein uL13	polymer	209	24602.6	1		Euglena gracilis
63	LX	Ribosomal protein eL13	polymer	226	25964.7	1		Euglena gracilis
64	LY	Ribosomal protein uL14	polymer	140	14991.8	1		Euglena gracilis
65	LZ	Ribosomal protein eL14	polymer	219	25592.4	1		Euglena gracilis
66	La	Ribosomal protein uL15	polymer	152	17320.3	1		Euglena gracilis
67	Lb	Ribosomal protein eL15	polymer	204	24447.9	1		Euglena gracilis
68	Lc	60S ribosomal protein L10	polymer	215	24695.1	1	UniProt (Q39724) Pfam (PF00252) In PDB	Euglena gracilis
69	Ld	Ribosomal protein uL18	polymer	260	29531.2	1		Euglena gracilis
70	Le	Ribosomal protein eL18	polymer	193	21935.4	1		Euglena gracilis
71	Lf	Ribosomal protein eL19	polymer	250	29130.9	1		Euglena gracilis
72	Lg	Ribosomal protein eL20	polymer	182	21398.3	1		Euglena gracilis
73	Lh	Ribosomal protein eL21	polymer	159	18279.6	1		Euglena gracilis
74	Li	Ribosomal protein uL22	polymer	164	18831.9	1		Euglena gracilis
75	Lj	Ribosomal protein eL22	polymer	170	18961.9	1		Euglena gracilis
76	Lk	Ribosomal protein uL23	polymer	163	18592.2	1		Euglena gracilis
77	Ll	Ribosomal protein uL24	polymer	146	16812.8	1		Euglena gracilis
78	Lm	Ribosomal protein eL24	polymer	157	17910.4	1		Euglena gracilis
79	Ln	Ribosomal protein eL27	polymer	134	15562.7	1		Euglena gracilis
80	Lo	Ribosomal protein eLEgr1	polymer	72	7961.1	1		Euglena gracilis
81	Lp	Ribosomal protein uL29	polymer	123	14662.9	1		Euglena gracilis
82	Lq	Ribosomal protein eL29	polymer	117	13747.2	1		Euglena gracilis
83	Lr	Ribosomal protein uL30	polymer	242	28755.6	1		Euglena gracilis
84	Ls	Ribosomal protein eL30	polymer	109	12053.0	1		Euglena gracilis
85	Lt	Ribosomal protein eL31	polymer	151	17630.3	1		Euglena gracilis
86	Lu	Ribosomal protein eL32	polymer	139	16413.3	1		Euglena gracilis
87	Lv	Ribosomal protein eL33	polymer	115	13155.9	1		Euglena gracilis
88	Lw	Ribosomal protein eL34	polymer	128	14908.8	1		Euglena gracilis
89	Lx	Ribosomal protein eL36	polymer	106	12423.2	1		Euglena gracilis
90	Ly	Ribosomal protein eL37	polymer	117	13528.1	1		Euglena gracilis
91	Lz	Ribosomal protein eL38	polymer	82	9478.5	1		Euglena gracilis
92	L1	Ribosomal protein eL39	polymer	51	6499.9	1		Euglena gracilis
93	L2	Ribosomal protein eL40	polymer	126	14220.8	1		Euglena gracilis
94	L3	Ribosomal protein eL41	polymer	34	4502.6	1		Euglena gracilis
95	L5	Ribosomal protein eL42	polymer	92	10559.5	1		Euglena gracilis
96	L4	Ribosomal protein eL43	polymer	106	12340.9	1		Euglena gracilis
97	L6	Ribosomal protein eLEgr2	polymer	69	8128.5	1		Euglena gracilis
98	L7	Ribosomal protein eLEgr3	polymer	64	7499.7	1		Euglena gracilis
99	Sb, Ly, L2, L5, L4	ZINC ION	non-polymer		65.4	5	Chemie (ZN)
100		water	water		18.0	1194	Chemie (HOH)

Contents of the asymmetric unit

Polymers	Number of chains	98
	Total formula weight	3672142.3
Non-Polymers*	Number of molecules	5
	Total formula weight	327.0
All*	Total formula weight	3672469.3

*Water molecules are not included.