Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6ZJ3

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
L1	0003735	molecular_function	structural constituent of ribosome
L1	0005840	cellular_component	ribosome
L1	0006412	biological_process	translation
L2	0003735	molecular_function	structural constituent of ribosome
L2	0005840	cellular_component	ribosome
L2	0006412	biological_process	translation
L3	0003735	molecular_function	structural constituent of ribosome
L3	0005840	cellular_component	ribosome
L3	0006412	biological_process	translation
L4	0003735	molecular_function	structural constituent of ribosome
L4	0005840	cellular_component	ribosome
L4	0006412	biological_process	translation
L5	0003735	molecular_function	structural constituent of ribosome
L5	0005840	cellular_component	ribosome
L5	0006412	biological_process	translation
LP	0003723	molecular_function	RNA binding
LP	0003735	molecular_function	structural constituent of ribosome
LP	0005840	cellular_component	ribosome
LP	0006412	biological_process	translation
LP	0015934	cellular_component	large ribosomal subunit
LQ	0003735	molecular_function	structural constituent of ribosome
LQ	0005840	cellular_component	ribosome
LQ	0006412	biological_process	translation
LR	0003735	molecular_function	structural constituent of ribosome
LR	0005840	cellular_component	ribosome
LR	0006412	biological_process	translation
LS	0003735	molecular_function	structural constituent of ribosome
LS	0005840	cellular_component	ribosome
LS	0006412	biological_process	translation
LT	0003735	molecular_function	structural constituent of ribosome
LT	0005840	cellular_component	ribosome
LT	0006412	biological_process	translation
LT	0019843	molecular_function	rRNA binding
LU	0003735	molecular_function	structural constituent of ribosome
LU	0005840	cellular_component	ribosome
LU	0006412	biological_process	translation
LV	0000470	biological_process	maturation of LSU-rRNA
LV	0003723	molecular_function	RNA binding
LV	0005840	cellular_component	ribosome
LV	0022625	cellular_component	cytosolic large ribosomal subunit
LV	1990904	cellular_component	ribonucleoprotein complex
LW	0003735	molecular_function	structural constituent of ribosome
LW	0005840	cellular_component	ribosome
LW	0006412	biological_process	translation
LW	0015934	cellular_component	large ribosomal subunit
LX	0003735	molecular_function	structural constituent of ribosome
LX	0005840	cellular_component	ribosome
LX	0006412	biological_process	translation
LY	0003735	molecular_function	structural constituent of ribosome
LY	0005840	cellular_component	ribosome
LY	0006412	biological_process	translation
LZ	0003723	molecular_function	RNA binding
LZ	0003735	molecular_function	structural constituent of ribosome
LZ	0005840	cellular_component	ribosome
LZ	0006412	biological_process	translation
La	0003735	molecular_function	structural constituent of ribosome
La	0005840	cellular_component	ribosome
La	0006412	biological_process	translation
La	0015934	cellular_component	large ribosomal subunit
Lb	0003735	molecular_function	structural constituent of ribosome
Lb	0005840	cellular_component	ribosome
Lb	0006412	biological_process	translation
Lc	0003735	molecular_function	structural constituent of ribosome
Lc	0005840	cellular_component	ribosome
Lc	0006412	biological_process	translation
Lc	0022625	cellular_component	cytosolic large ribosomal subunit
Lc	1990904	cellular_component	ribonucleoprotein complex
Ld	0003735	molecular_function	structural constituent of ribosome
Ld	0005840	cellular_component	ribosome
Ld	0006412	biological_process	translation
Ld	0008097	molecular_function	5S rRNA binding
Le	0003735	molecular_function	structural constituent of ribosome
Le	0005840	cellular_component	ribosome
Le	0006412	biological_process	translation
Lf	0003723	molecular_function	RNA binding
Lf	0003735	molecular_function	structural constituent of ribosome
Lf	0005840	cellular_component	ribosome
Lf	0006412	biological_process	translation
Lf	0022625	cellular_component	cytosolic large ribosomal subunit
Lg	0003735	molecular_function	structural constituent of ribosome
Lg	0005840	cellular_component	ribosome
Lg	0006412	biological_process	translation
Lh	0003735	molecular_function	structural constituent of ribosome
Lh	0005840	cellular_component	ribosome
Lh	0006412	biological_process	translation
Li	0003735	molecular_function	structural constituent of ribosome
Li	0005840	cellular_component	ribosome
Li	0006412	biological_process	translation
Li	0015934	cellular_component	large ribosomal subunit
Lj	0003735	molecular_function	structural constituent of ribosome
Lj	0005840	cellular_component	ribosome
Lj	0006412	biological_process	translation
Lk	0003735	molecular_function	structural constituent of ribosome
Lk	0005840	cellular_component	ribosome
Lk	0006412	biological_process	translation
Ll	0003723	molecular_function	RNA binding
Ll	0003735	molecular_function	structural constituent of ribosome
Ll	0006412	biological_process	translation
Ll	0015934	cellular_component	large ribosomal subunit
Ln	0003735	molecular_function	structural constituent of ribosome
Ln	0005840	cellular_component	ribosome
Ln	0006412	biological_process	translation
Lp	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Lp	0003735	molecular_function	structural constituent of ribosome
Lp	0005840	cellular_component	ribosome
Lp	0006412	biological_process	translation
Lp	0022625	cellular_component	cytosolic large ribosomal subunit
Lq	0003735	molecular_function	structural constituent of ribosome
Lq	0005840	cellular_component	ribosome
Lq	0006412	biological_process	translation
Lr	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Lr	0003735	molecular_function	structural constituent of ribosome
Lr	0022625	cellular_component	cytosolic large ribosomal subunit
Ls	0003723	molecular_function	RNA binding
Lt	0003735	molecular_function	structural constituent of ribosome
Lt	0005840	cellular_component	ribosome
Lt	0006412	biological_process	translation
Lu	0003735	molecular_function	structural constituent of ribosome
Lu	0005840	cellular_component	ribosome
Lu	0006412	biological_process	translation
Lv	0003735	molecular_function	structural constituent of ribosome
Lv	0005840	cellular_component	ribosome
Lv	0006412	biological_process	translation
Lw	0003735	molecular_function	structural constituent of ribosome
Lw	0005840	cellular_component	ribosome
Lw	0006412	biological_process	translation
Lx	0003735	molecular_function	structural constituent of ribosome
Lx	0005840	cellular_component	ribosome
Lx	0006412	biological_process	translation
Ly	0003735	molecular_function	structural constituent of ribosome
Ly	0005840	cellular_component	ribosome
Ly	0006412	biological_process	translation
Lz	0003735	molecular_function	structural constituent of ribosome
Lz	0005840	cellular_component	ribosome
Lz	0006412	biological_process	translation
SA	0003735	molecular_function	structural constituent of ribosome
SA	0005840	cellular_component	ribosome
SA	0006412	biological_process	translation
SB	0003735	molecular_function	structural constituent of ribosome
SB	0005840	cellular_component	ribosome
SB	0006412	biological_process	translation
SB	0015935	cellular_component	small ribosomal subunit
SC	0003723	molecular_function	RNA binding
SC	0003735	molecular_function	structural constituent of ribosome
SC	0006412	biological_process	translation
SC	0015935	cellular_component	small ribosomal subunit
SD	0003723	molecular_function	RNA binding
SD	0003735	molecular_function	structural constituent of ribosome
SD	0006412	biological_process	translation
SD	0015935	cellular_component	small ribosomal subunit
SD	0019843	molecular_function	rRNA binding
SE	0003723	molecular_function	RNA binding
SE	0003735	molecular_function	structural constituent of ribosome
SE	0005840	cellular_component	ribosome
SE	0006412	biological_process	translation
SF	0003723	molecular_function	RNA binding
SF	0003735	molecular_function	structural constituent of ribosome
SF	0005840	cellular_component	ribosome
SF	0006412	biological_process	translation
SF	0015935	cellular_component	small ribosomal subunit
SG	0003735	molecular_function	structural constituent of ribosome
SG	0005840	cellular_component	ribosome
SG	0006412	biological_process	translation
SH	0003735	molecular_function	structural constituent of ribosome
SH	0006412	biological_process	translation
SH	0015935	cellular_component	small ribosomal subunit
SI	0003735	molecular_function	structural constituent of ribosome
SI	0005840	cellular_component	ribosome
SI	0006412	biological_process	translation
SJ	0003735	molecular_function	structural constituent of ribosome
SJ	0005840	cellular_component	ribosome
SJ	0006412	biological_process	translation
SK	0003735	molecular_function	structural constituent of ribosome
SK	0005840	cellular_component	ribosome
SK	0006412	biological_process	translation
SL	0003735	molecular_function	structural constituent of ribosome
SL	0005840	cellular_component	ribosome
SL	0006412	biological_process	translation
SM	0003735	molecular_function	structural constituent of ribosome
SM	0005840	cellular_component	ribosome
SM	0006412	biological_process	translation
SM	0015935	cellular_component	small ribosomal subunit
SO	0003735	molecular_function	structural constituent of ribosome
SO	0005840	cellular_component	ribosome
SO	0006412	biological_process	translation
SP	0003735	molecular_function	structural constituent of ribosome
SP	0005840	cellular_component	ribosome
SP	0006412	biological_process	translation
SP	0015935	cellular_component	small ribosomal subunit
SQ	0003735	molecular_function	structural constituent of ribosome
SQ	0005840	cellular_component	ribosome
SQ	0006412	biological_process	translation
SR	0003676	molecular_function	nucleic acid binding
SR	0003723	molecular_function	RNA binding
SR	0003735	molecular_function	structural constituent of ribosome
SR	0005840	cellular_component	ribosome
SR	0006412	biological_process	translation
SS	0003735	molecular_function	structural constituent of ribosome
SS	0005840	cellular_component	ribosome
SS	0006412	biological_process	translation
SS	0008270	molecular_function	zinc ion binding
ST	0003735	molecular_function	structural constituent of ribosome
ST	0005840	cellular_component	ribosome
ST	0006412	biological_process	translation
SU	0003735	molecular_function	structural constituent of ribosome
SU	0005840	cellular_component	ribosome
SU	0006412	biological_process	translation
SV	0003735	molecular_function	structural constituent of ribosome
SV	0005840	cellular_component	ribosome
SV	0006412	biological_process	translation
SW	0003723	molecular_function	RNA binding
SW	0003735	molecular_function	structural constituent of ribosome
SW	0005840	cellular_component	ribosome
SW	0006412	biological_process	translation
SW	0015935	cellular_component	small ribosomal subunit
SX	0003735	molecular_function	structural constituent of ribosome
SX	0005840	cellular_component	ribosome
SX	0006412	biological_process	translation
SY	0003735	molecular_function	structural constituent of ribosome
SY	0005840	cellular_component	ribosome
SY	0006412	biological_process	translation
SZ	0003735	molecular_function	structural constituent of ribosome
SZ	0005840	cellular_component	ribosome
SZ	0006412	biological_process	translation
Sb	0003735	molecular_function	structural constituent of ribosome
Sb	0005840	cellular_component	ribosome
Sb	0006412	biological_process	translation
Sc	0003735	molecular_function	structural constituent of ribosome
Sc	0005840	cellular_component	ribosome
Sc	0006412	biological_process	translation
Sd	0003735	molecular_function	structural constituent of ribosome
Sd	0005840	cellular_component	ribosome
Sd	0006412	biological_process	translation
Se	0003735	molecular_function	structural constituent of ribosome
Se	0005840	cellular_component	ribosome
Se	0006412	biological_process	translation
Sf	0003735	molecular_function	structural constituent of ribosome
Sf	0005840	cellular_component	ribosome
Sf	0006412	biological_process	translation
Sg	0003676	molecular_function	nucleic acid binding
Sg	0003723	molecular_function	RNA binding
Sh	0043022	molecular_function	ribosome binding
Sh	0045182	molecular_function	translation regulator activity

Functional Information from PROSITE/UniProt

site_id	PS01189
Number of Residues	19
Details	RIBOSOMAL_S12E Ribosomal protein S12e signature. ALKevLkrArahDGLaiGL

Chain	Residue	Details
SQ	ALA25-LEU43

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FkesevvDciGvTrGHGfeGvihR

Chain	Residue	Details
LQ	PHE211-ARG234

site_id	PS01172
Number of Residues	12
Details	RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKitLKlqC

Chain	Residue	Details
L4	LYS63-CYS74

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. PrkvRrlAVrAALaASAipalvmaRGH

Chain	Residue	Details
LR	PRO110-HIS136

site_id	PS00580
Number of Residues	21
Details	RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRyqswRhvRVses..WRKphG

Chain	Residue	Details
Lu	PHE24-GLY44

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. KLCKIKiVRRSIARV

Chain	Residue	Details
Lp	LYS43-VAL57

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GfiVLTTShGIMdheeAR

Chain	Residue	Details
SJ	GLY100-ARG117

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqqGMRgAFGKPnGlaARV

Chain	Residue	Details
Lc	ALA108-VAL129

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAyvVVGDcd.GhVGlGvrcsk.EVat.AI

Chain	Residue	Details
SF	GLY94-ILE126

site_id	PS00733
Number of Residues	8
Details	RIBOSOMAL_S26E Ribosomal protein S26e signature. YCISCAIH

Chain	Residue	Details
Sb	TYR74-HIS81

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QsclVknKdiRkFlDGIYVssK

Chain	Residue	Details
LT	GLN165-LYS186

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVFKlglAkSihhARvLI

Chain	Residue	Details
SD	LEU105-ILE129

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTtSfGkRngrt.HklCkRCG

Chain	Residue	Details
Ly	GLY4-GLY23

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGqtSQlyAvrqAiAKAL

Chain	Residue	Details
SL	GLY79-LEU97

site_id	PS00709
Number of Residues	25
Details	RIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkyclGyQstLKslRqGksKlVII

Chain	Residue	Details
Ls	SER23-ILE47

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. DLGTacGKfftasmLsIiDaG

Chain	Residue	Details
Ls	ASP79-GLY99

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqrkhwrrk.DGtfiyFedNagVI

Chain	Residue	Details
LY	ALA79-ILE105

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR

Chain	Residue	Details
SP	LYS60-ARG67

site_id	PS00528
Number of Residues	15
Details	RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPkhWmMdK

Chain	Residue	Details
SE	HIS8-LYS22

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREARrL

Chain	Residue	Details
Sd	GLU67-LEU75

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLeksRkDkdAkfrLvlVesrihrLarY

Chain	Residue	Details
ST	VAL98-TYR128

site_id	PS00216
Number of Residues	18
Details	SUGAR_TRANSPORT_1 Sugar transport proteins signature 1. LLYPVDVVGRRwrhktdG

Chain	Residue	Details
SI	LEU134-GLY151

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSAswDsTMRLWDL

Chain	Residue	Details
Sh	ALA82-LEU96
Sh	ILE124-THR138
Sh	CYS211-LEU225

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKifnaveIkgemVGhyLGEFsiT

Chain	Residue	Details
SW	ASN103-THR127

site_id	PS01190
Number of Residues	11
Details	RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRmIELLK

Chain	Residue	Details
Lx	PRO53-LYS63

site_id	PS00548
Number of Residues	37
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfkdGyMikSghpAeiyVDkavrhvyLrqGvlG

Chain	Residue	Details
SC	ALA149-GLY185

site_id	PS01193
Number of Residues	20
Details	RIBOSOMAL_S8E Ribosomal protein S8e signature. KraTGGkrhih.RkKrKfELG

Chain	Residue	Details
SK	LYS11-GLY30

site_id	PS00299
Number of Residues	26
Details	UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD

Chain	Residue	Details
Sf	LYS27-ASP52

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IrKLLACKVHLG

Chain	Residue	Details
SB	ILE15-GLY26

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PriLLItDprtDhqaItEsaygNVP

Chain	Residue	Details
SB	PRO119-PRO143

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KLLGtGrLsqg..ViVkarsFSqgAerkIkkaG

Chain	Residue	Details
La	LYS115-GLY145

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. VeqLTGQtpVlSkARlT

Chain	Residue	Details
LS	VAL47-THR63

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPTD

Chain	Residue	Details
SO	LEU117-ASP139

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHmwGlrVRGQ

Chain	Residue	Details
SR	ARG122-GLN135

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsnpCHLEVvL

Chain	Residue	Details
Li	ARG128-LEU152

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)