6TCY
X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with a inhibitor SS555
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, BBB | Histone deacetylase 6 | polymer | 359 | 39899.1 | 2 | UniProt (F8W4B7) Pfam (PF00850) In PDB | Danio rerio (Zebrafish) | |
2 | AAA, BBB | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
3 | AAA, BBB | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) | |||
4 | AAA, BBB | 4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide | non-polymer | 386.4 | 2 | Chemie (N28) | |||
5 | AAA, BBB | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
6 | AAA | 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL | non-polymer | 164.2 | 1 | Chemie (TOE) | |||
7 | AAA | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
8 | AAA | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
9 | BBB | 2-METHOXYETHANOL | non-polymer | 76.1 | 1 | Chemie (MXE) | |||
10 | BBB | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 1 | Chemie (DMS) | |||
11 | water | water | 18.0 | 758 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 79798.3 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 1940.6 | |
All* | Total formula weight | 81738.8 |