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5K8B

X-ray structure of KdnA, 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase, from Shewanella oneidensis in the presence of the external aldimine with PLP and glutamate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminasepolymer40344768.34UniProt (Q8EEB1)
Pfam (PF01041)
In PDB
Shewanella oneidensis (strain MR-1)
2A, B, C, DN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACIDnon-polymer378.34Chemie (PDG)
3A, B, C, DCHLORIDE IONnon-polymer35.55Chemie (CL)
4CSODIUM IONnon-polymer23.01Chemie (NA)
5waterwater18.0710Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 395 (UniProt: Q8EEB1)
PDBExternal DatabaseDetails
Leu 396-expression tag
Glu 397-expression tag
His 398-expression tag
His 399-expression tag
His 400-expression tag
His 401-expression tag
His 402-expression tag
His 403-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight179073.1
Non-Polymers*Number of molecules10
Total formula weight1713.3
All*Total formula weight180786.4
*Water molecules are not included.

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PDB entries from 2024-06-12

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