4YD2
Nicked complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | DNA-directed DNA/RNA polymerase mu | polymer | 354 | 39844.2 | 1 | UniProt (Q9NP87) Pfam (PF14716) Pfam (PF10391) Pfam (PF14792) Pfam (PF14791) In PDB | Homo sapiens (Human) | Pol Mu,Terminal transferase |
| 2 | T | DNA (5'-D(*CP*GP*GP*CP*AP*AP*T)-3') | polymer | 10 | 3054.0 | 1 | Homo sapiens | ||
| 3 | P | DNA (5'-D(*CP*GP*TP*AP*T)-3') | polymer | 5 | 1495.0 | 1 | Homo sapiens | ||
| 4 | D | DNA (5'-D(P*GP*CP*CP*G)-3') | polymer | 4 | 1191.8 | 1 | Homo sapiens | ||
| 5 | A | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 6 | A | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 7 | A | PYROPHOSPHATE | non-polymer | 178.0 | 1 | Chemie (PPV) | |||
| 8 | water | water | 18.0 | 142 | Chemie (HOH) |
Sequence modifications
A: 134 - 494 (UniProt: Q9NP87)
| PDB | External Database | Details |
|---|---|---|
| Gly 129 | - | expression tag |
| Ser 130 | - | expression tag |
| Ala 131 | - | expression tag |
| Ala 132 | - | expression tag |
| Ala 133 | - | expression tag |
| - | Pro 398 | deletion |
| - | Gly 399 | deletion |
| - | Ala 400 | deletion |
| - | Ala 401 | deletion |
| - | Val 402 | deletion |
| - | Gly 403 | deletion |
| - | Gly 404 | deletion |
| - | Ser 405 | deletion |
| - | Thr 406 | deletion |
| - | Arg 407 | deletion |
| - | Pro 408 | deletion |
| - | Cys 409 | deletion |
| Gly 410 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 45585.0 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 353.3 | |
| All* | Total formula weight | 45938.3 |
