Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VI6
DownloadVisualize
BU of 2vi6 by Molmil
Crystal Structure of the Nanog Homeodomain
Descriptor: HOMEOBOX PROTEIN NANOG
Authors:Jauch, R, Ng, C.K.L, Saitakendu, K.S, Stevens, R.C, Kolatkar, P.R.
Deposit date:2007-11-28
Release date:2008-01-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and DNA Binding of the Homeodomain of the Stem Cell Transcription Factor Nanog.
J.Mol.Biol., 376, 2008
4RBO
DownloadVisualize
BU of 4rbo by Molmil
Crystal structure of a Nanog homeobox (NANOG) from Homo sapiens at 3.30 A resolution
Descriptor: 5'-D(*CP*TP*TP*GP*AP*AP*TP*GP*GP*GP*CP*C)-3', 5'-D(*GP*GP*CP*CP*CP*AP*TP*TP*CP*AP*AP*G)-3', Putative homeobox protein NANOGP8
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2014-09-12
Release date:2014-10-01
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
2KT0
DownloadVisualize
BU of 2kt0 by Molmil
Solution structure of human stem cell transcription factor Nanog homeodomain fragment
Descriptor: Homeobox protein NANOG
Authors:Sahu, S.C, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-01-15
Release date:2010-02-02
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution structure of human stem cell transcription factor Nanog
To be Published
6VTX
DownloadVisualize
BU of 6vtx by Molmil
Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA
Descriptor: DNA (5'-D(*AP*GP*GP*GP*GP*GP*TP*GP*TP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*CP*AP*CP*CP*CP*CP*CP*T)-3'), Krueppel-like factor 4, ...
Authors:Sharma, R, Sharma, S, Choi, K.J, Ferreon, A.C.M, Ferreon, J.C, Sankaran, B, MacKenzie, K.R, Kim, C.
Deposit date:2020-02-13
Release date:2021-09-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Liquid condensation of reprogramming factor KLF4 with DNA provides a mechanism for chromatin organization.
Nat Commun, 12, 2021
3J6T
DownloadVisualize
BU of 3j6t by Molmil
Cryo-EM structure of Dengue virus serotype 3 at 37 degrees C
Descriptor: envelope protein, membrane protein
Authors:Fibriansah, G, Tan, J.L, Smith, S.A, de Alwis, R, Ng, T.-S, Kostyuchenko, V.A, Kukkaro, P, de Silva, A.M, Crowe Jr, J.E, Lok, S.-M.
Deposit date:2014-03-25
Release date:2015-03-04
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:A highly potent human antibody neutralizes dengue virus serotype 3 by binding across three surface proteins.
Nat Commun, 6, 2015
3J6S
DownloadVisualize
BU of 3j6s by Molmil
Cryo-EM structure of Dengue virus serotype 3 at 28 degrees C
Descriptor: envelope protein, membrane protein
Authors:Fibriansah, G, Tan, J.L, Smith, S.A, de Alwis, R, Ng, T.-S, Kostyuchenko, V.A, Kukkaro, P, de Silva, A.M, Crowe Jr, J.E, Lok, S.-M.
Deposit date:2014-03-24
Release date:2015-03-04
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6 Å)
Cite:A highly potent human antibody neutralizes dengue virus serotype 3 by binding across three surface proteins.
Nat Commun, 6, 2015
3J6U
DownloadVisualize
BU of 3j6u by Molmil
Cryo-EM structure of Dengue virus serotype 3 in complex with human antibody 5J7 Fab
Descriptor: Fab 5J7 heavy chain, Fab 5J7 light chain, envelope protein, ...
Authors:Fibriansah, G, Tan, J.L, Smith, S.A, de Alwis, R, Ng, T.-S, Kostyuchenko, V.A, Kukkaro, P, de Silva, A.M, Crowe Jr, J.E, Lok, S.-M.
Deposit date:2014-03-26
Release date:2015-03-04
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:A highly potent human antibody neutralizes dengue virus serotype 3 by binding across three surface proteins.
Nat Commun, 6, 2015
5NNK
DownloadVisualize
BU of 5nnk by Molmil
The structure of LL-37 crystallized in the presence LDAO
Descriptor: Cathelicidin antimicrobial peptide, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Zeth, K, Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
5NMN
DownloadVisualize
BU of 5nmn by Molmil
Atomic resolution structure of LL-37 in a monomeric state
Descriptor: Cathelicidin antimicrobial peptide, SODIUM ION
Authors:Zeth, K, Sancho-Vaello, E.
Deposit date:2017-04-06
Release date:2018-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
5NNM
DownloadVisualize
BU of 5nnm by Molmil
The crystal structure of dimeric LL-37
Descriptor: CARBONATE ION, Cathelicidin antimicrobial peptide
Authors:Zeth, K, Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
7MM0
DownloadVisualize
BU of 7mm0 by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, B1-182.1 Fab heavy chain, ...
Authors:Zhou, T, Tsybovsky, T, Kwong, P.D.
Deposit date:2021-04-29
Release date:2021-07-28
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.
Science, 373, 2021
7MLZ
DownloadVisualize
BU of 7mlz by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Descriptor: B1-182.1 Fab heavy chain, B1-182.1 Fab light chain, Spike protein S1, ...
Authors:Zhou, T, Tsybovsky, T, Kwong, P.D.
Deposit date:2021-04-29
Release date:2021-07-28
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.
Science, 373, 2021
7LRT
DownloadVisualize
BU of 7lrt by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS-CoV-2 spike glycoprotein, ...
Authors:Zhou, T, Tsybovsky, T.
Deposit date:2021-02-17
Release date:2021-07-14
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.
Science, 373, 2021
7LRS
DownloadVisualize
BU of 7lrs by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Descriptor: Spike glycoprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, antibody A23-58.1 heavy chain, ...
Authors:Zhou, T, Tsybovsky, Y.
Deposit date:2021-02-17
Release date:2021-07-14
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.
Science, 373, 2021
5NNT
DownloadVisualize
BU of 5nnt by Molmil
The dimeric structure of LL-37 crystallized in DPC
Descriptor: Cathelicidin antimicrobial peptide, dodecyl 2-(trimethylammonio)ethyl phosphate
Authors:Zeth, K, Sancho-Vaello, E.
Deposit date:2017-04-10
Release date:2018-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.209 Å)
Cite:Structural remodeling and oligomerization of human cathelicidin on membranes suggest fibril-like structures as active species.
Sci Rep, 7, 2017
7JVB
DownloadVisualize
BU of 7jvb by Molmil
Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20
Descriptor: CACODYLATE ION, Nanobody Nb20, Spike protein S1
Authors:Xiang, Y, Xiao, Z, Liu, H, Sang, Z, Schneidman-Duhovny, D, Zhang, C, Shi, Y.
Deposit date:2020-08-20
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.287 Å)
Cite:Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.
Science, 370, 2020
6YAI
DownloadVisualize
BU of 6yai by Molmil
Clathrin with bound beta2 appendage of AP2
Descriptor: AP-2 complex subunit beta, Clathrin heavy chain, Clathrin light chain
Authors:Kovtun, O, Kane Dickson, V, Kelly, B.T, Owen, D, Briggs, J.A.G.
Deposit date:2020-03-12
Release date:2020-07-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (9.2 Å)
Cite:Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv, 6, 2020
6YAH
DownloadVisualize
BU of 6yah by Molmil
AP2 in clathrin coats assembled on a membrane containing dileucine- and tyrosine-based cargo peptides
Descriptor: AP-2 complex subunit alpha-2, AP-2 complex subunit beta, AP-2 complex subunit mu, ...
Authors:Kovtun, O, Kane Dickson, V, Kelly, B.T, Owen, D, Briggs, J.A.G.
Deposit date:2020-03-12
Release date:2020-07-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (10.2 Å)
Cite:Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv, 6, 2020
6QNO
DownloadVisualize
BU of 6qno by Molmil
Rhodopsin-Gi protein complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab antibody fragment heavy chain, Fab antibody fragment light chain, ...
Authors:Tsai, C.-J, Marino, J, Adaixo, R.J, Pamula, F, Muehle, J, Maeda, S, Flock, T, Taylor, N.M.I, Mohammed, I, Matile, H, Dawson, R.J.P, Deupi, X, Stahlberg, H, Schertler, G.F.X.
Deposit date:2019-02-11
Release date:2019-07-10
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:Cryo-EM structure of the rhodopsin-G alpha i-beta gamma complex reveals binding of the rhodopsin C-terminal tail to the G beta subunit.
Elife, 8, 2019
6QNK
DownloadVisualize
BU of 6qnk by Molmil
Antibody FAB fragment targeting Gi protein heterotrimer
Descriptor: 1,2-ETHANEDIOL, D-MALATE, FAB heavy chain, ...
Authors:Tsai, C.-J, Muehle, J, Pamula, F, Dawson, R.J.P, Maeda, S, Deupi, X, Schertler, G.F.X.
Deposit date:2019-02-11
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cryo-EM structure of the rhodopsin-G alpha i-beta gamma complex reveals binding of the rhodopsin C-terminal tail to the G beta subunit.
Elife, 8, 2019
6YAF
DownloadVisualize
BU of 6yaf by Molmil
AP2 on a membrane containing tyrosine-based cargo peptide
Descriptor: AP-2 complex subunit alpha-2, AP-2 complex subunit beta, AP-2 complex subunit mu, ...
Authors:Kovtun, O, Kane Dickson, V, Kelly, B.T, Owen, D, Briggs, J.A.G.
Deposit date:2020-03-12
Release date:2020-07-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv, 6, 2020
7JZL
DownloadVisualize
BU of 7jzl by Molmil
SARS-CoV-2 spike in complex with LCB1 (2RBDs open)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LCB1, ...
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JZN
DownloadVisualize
BU of 7jzn by Molmil
SARS-CoV-2 spike in complex with LCB3 (2RBDs open)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LCB3, ...
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JZM
DownloadVisualize
BU of 7jzm by Molmil
SARS-CoV-2 spike in complex with LCB3 (local refinement of the RBD and LCB3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, LCB3, Spike glycoprotein
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JZU
DownloadVisualize
BU of 7jzu by Molmil
SARS-CoV-2 spike in complex with LCB1 (local refinement of the RBD and LCB1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, LCB1, Spike glycoprotein
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon