Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8F6M

Complex of Rabbit muscle pyruvate kinase with ADP and the phosphonate analogue of PEP mimicking the Michaelis complex.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003729molecular_functionmRNA binding
A0003824molecular_functioncatalytic activity
A0004713molecular_functionprotein tyrosine kinase activity
A0004743molecular_functionpyruvate kinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005791cellular_componentrough endoplasmic reticulum
A0006096biological_processglycolytic process
A0006417biological_processregulation of translation
A0016301molecular_functionkinase activity
A0030955molecular_functionpotassium ion binding
A0032869biological_processcellular response to insulin stimulus
A0046872molecular_functionmetal ion binding
A1903672biological_processpositive regulation of sprouting angiogenesis
A2000767biological_processpositive regulation of cytoplasmic translation
B0000287molecular_functionmagnesium ion binding
B0003729molecular_functionmRNA binding
B0003824molecular_functioncatalytic activity
B0004713molecular_functionprotein tyrosine kinase activity
B0004743molecular_functionpyruvate kinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005791cellular_componentrough endoplasmic reticulum
B0006096biological_processglycolytic process
B0006417biological_processregulation of translation
B0016301molecular_functionkinase activity
B0030955molecular_functionpotassium ion binding
B0032869biological_processcellular response to insulin stimulus
B0046872molecular_functionmetal ion binding
B1903672biological_processpositive regulation of sprouting angiogenesis
B2000767biological_processpositive regulation of cytoplasmic translation
C0000287molecular_functionmagnesium ion binding
C0003729molecular_functionmRNA binding
C0003824molecular_functioncatalytic activity
C0004713molecular_functionprotein tyrosine kinase activity
C0004743molecular_functionpyruvate kinase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005791cellular_componentrough endoplasmic reticulum
C0006096biological_processglycolytic process
C0006417biological_processregulation of translation
C0016301molecular_functionkinase activity
C0030955molecular_functionpotassium ion binding
C0032869biological_processcellular response to insulin stimulus
C0046872molecular_functionmetal ion binding
C1903672biological_processpositive regulation of sprouting angiogenesis
C2000767biological_processpositive regulation of cytoplasmic translation
D0000287molecular_functionmagnesium ion binding
D0003729molecular_functionmRNA binding
D0003824molecular_functioncatalytic activity
D0004713molecular_functionprotein tyrosine kinase activity
D0004743molecular_functionpyruvate kinase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005791cellular_componentrough endoplasmic reticulum
D0006096biological_processglycolytic process
D0006417biological_processregulation of translation
D0016301molecular_functionkinase activity
D0030955molecular_functionpotassium ion binding
D0032869biological_processcellular response to insulin stimulus
D0046872molecular_functionmetal ion binding
D1903672biological_processpositive regulation of sprouting angiogenesis
D2000767biological_processpositive regulation of cytoplasmic translation
E0000287molecular_functionmagnesium ion binding
E0003729molecular_functionmRNA binding
E0003824molecular_functioncatalytic activity
E0004713molecular_functionprotein tyrosine kinase activity
E0004743molecular_functionpyruvate kinase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005791cellular_componentrough endoplasmic reticulum
E0006096biological_processglycolytic process
E0006417biological_processregulation of translation
E0016301molecular_functionkinase activity
E0030955molecular_functionpotassium ion binding
E0032869biological_processcellular response to insulin stimulus
E0046872molecular_functionmetal ion binding
E1903672biological_processpositive regulation of sprouting angiogenesis
E2000767biological_processpositive regulation of cytoplasmic translation
F0000287molecular_functionmagnesium ion binding
F0003729molecular_functionmRNA binding
F0003824molecular_functioncatalytic activity
F0004713molecular_functionprotein tyrosine kinase activity
F0004743molecular_functionpyruvate kinase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005791cellular_componentrough endoplasmic reticulum
F0006096biological_processglycolytic process
F0006417biological_processregulation of translation
F0016301molecular_functionkinase activity
F0030955molecular_functionpotassium ion binding
F0032869biological_processcellular response to insulin stimulus
F0046872molecular_functionmetal ion binding
F1903672biological_processpositive regulation of sprouting angiogenesis
F2000767biological_processpositive regulation of cytoplasmic translation
G0000287molecular_functionmagnesium ion binding
G0003729molecular_functionmRNA binding
G0003824molecular_functioncatalytic activity
G0004713molecular_functionprotein tyrosine kinase activity
G0004743molecular_functionpyruvate kinase activity
G0005515molecular_functionprotein binding
G0005524molecular_functionATP binding
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005791cellular_componentrough endoplasmic reticulum
G0006096biological_processglycolytic process
G0006417biological_processregulation of translation
G0016301molecular_functionkinase activity
G0030955molecular_functionpotassium ion binding
G0032869biological_processcellular response to insulin stimulus
G0046872molecular_functionmetal ion binding
G1903672biological_processpositive regulation of sprouting angiogenesis
G2000767biological_processpositive regulation of cytoplasmic translation
H0000287molecular_functionmagnesium ion binding
H0003729molecular_functionmRNA binding
H0003824molecular_functioncatalytic activity
H0004713molecular_functionprotein tyrosine kinase activity
H0004743molecular_functionpyruvate kinase activity
H0005515molecular_functionprotein binding
H0005524molecular_functionATP binding
H0005634cellular_componentnucleus
H0005737cellular_componentcytoplasm
H0005791cellular_componentrough endoplasmic reticulum
H0006096biological_processglycolytic process
H0006417biological_processregulation of translation
H0016301molecular_functionkinase activity
H0030955molecular_functionpotassium ion binding
H0032869biological_processcellular response to insulin stimulus
H0046872molecular_functionmetal ion binding
H1903672biological_processpositive regulation of sprouting angiogenesis
H2000767biological_processpositive regulation of cytoplasmic translation
Functional Information from PROSITE/UniProt
site_idPS00110
Number of Residues13
DetailsPYRUVATE_KINASE Pyruvate kinase active site signature. IkIISKIENhEGV
ChainResidueDetails
AILE264-VAL276

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues112
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
AASN69
AASN74
ASER76
AARG105
AASP112
ATHR113
AARG119
ALYS206
AGLU271
ATHR431
AHIS463
ATRP481
AARG488
AARG515
BASN69
BASN74
BSER76
BARG105
BASP112
BTHR113
BARG119
BLYS206
BGLU271
BTHR431
BHIS463
BTRP481
BARG488
BARG515
CASN69
CASN74
CSER76
CARG105
CASP112
CTHR113
CARG119
CLYS206
CGLU271
CTHR431
CHIS463
CTRP481
CARG488
CARG515
DASN69
DASN74
DSER76
DARG105
DASP112
DTHR113
DARG119
DLYS206
DGLU271
DTHR431
DHIS463
DTRP481
DARG488
DARG515
EASN69
EASN74
ESER76
EARG105
EASP112
ETHR113
EARG119
ELYS206
EGLU271
ETHR431
EHIS463
ETRP481
EARG488
EARG515
FASN69
FASN74
FSER76
FARG105
FASP112
FTHR113
FARG119
FLYS206
FGLU271
FTHR431
FHIS463
FTRP481
FARG488
FARG515
GASN69
GASN74
GSER76
GARG105
GASP112
GTHR113
GARG119
GLYS206
GGLU271
GTHR431
GHIS463
GTRP481
GARG488
GARG515
HASN69
HASN74
HSER76
HARG105
HASP112
HTHR113
HARG119
HLYS206
HGLU271
HTHR431
HHIS463
HTRP481
HARG488
HARG515

site_idSWS_FT_FI2
Number of Residues40
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P30613
ChainResidueDetails
AARG72
ALYS269
AGLY294
AASP295
ATHR327
BARG72
BLYS269
BGLY294
BASP295
BTHR327
CARG72
CLYS269
CGLY294
CASP295
CTHR327
DARG72
DLYS269
DGLY294
DASP295
DTHR327
EARG72
ELYS269
EGLY294
EASP295
ETHR327
FARG72
FLYS269
FGLY294
FASP295
FTHR327
GARG72
GLYS269
GGLY294
GASP295
GTHR327
HARG72
HLYS269
HGLY294
HASP295
HTHR327

site_idSWS_FT_FI3
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000250|UniProtKB:P00549
ChainResidueDetails
ALYS269
BLYS269
CLYS269
DLYS269
ELYS269
FLYS269
GLYS269
HLYS269

site_idSWS_FT_FI4
Number of Residues8
DetailsMOD_RES: N-acetylserine => ECO:0000250|UniProtKB:P11979
ChainResidueDetails
ASER1
BSER1
CSER1
DSER1
ESER1
FSER1
GSER1
HSER1

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N6,N6,N6-trimethyllysine => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS2
BLYS2
CLYS2
DLYS2
ELYS2
FLYS2
GLYS2
HLYS2

site_idSWS_FT_FI6
Number of Residues16
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ASER36
ASER126
BSER36
BSER126
CSER36
CSER126
DSER36
DSER126
ESER36
ESER126
FSER36
FSER126
GSER36
GSER126
HSER36
HSER126

site_idSWS_FT_FI7
Number of Residues16
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ATHR40
ATHR194
BTHR40
BTHR194
CTHR40
CTHR194
DTHR40
DTHR194
ETHR40
ETHR194
FTHR40
FTHR194
GTHR40
GTHR194
HTHR40
HTHR194

site_idSWS_FT_FI8
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS61
ALYS88
ALYS304
BLYS61
BLYS88
BLYS304
CLYS61
CLYS88
CLYS304
DLYS61
DLYS88
DLYS304
ELYS61
ELYS88
ELYS304
FLYS61
FLYS88
FLYS304
GLYS61
GLYS88
GLYS304
HLYS61
HLYS88
HLYS304

site_idSWS_FT_FI9
Number of Residues16
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P52480
ChainResidueDetails
ALYS65
ALYS497
BLYS65
BLYS497
CLYS65
CLYS497
DLYS65
DLYS497
ELYS65
ELYS497
FLYS65
FLYS497
GLYS65
GLYS497
HLYS65
HLYS497

site_idSWS_FT_FI10
Number of Residues16
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P11980
ChainResidueDetails
ASER96
ASER99
BSER96
BSER99
CSER96
CSER99
DSER96
DSER99
ESER96
ESER99
FSER96
FSER99
GSER96
GSER99
HSER96
HSER99

site_idSWS_FT_FI11
Number of Residues16
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ATYR104
ATYR174
BTYR104
BTYR174
CTYR104
CTYR174
DTYR104
DTYR174
ETYR104
ETYR174
FTYR104
FTYR174
GTYR104
GTYR174
HTYR104
HTYR174

site_idSWS_FT_FI12
Number of Residues8
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P52480
ChainResidueDetails
ATYR147
BTYR147
CTYR147
DTYR147
ETYR147
FTYR147
GTYR147
HTYR147

site_idSWS_FT_FI13
Number of Residues16
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P52480
ChainResidueDetails
ALYS165
ALYS321
BLYS165
BLYS321
CLYS165
CLYS321
DLYS165
DLYS321
ELYS165
ELYS321
FLYS165
FLYS321
GLYS165
GLYS321
HLYS165
HLYS321

site_idSWS_FT_FI14
Number of Residues8
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS265
BLYS265
CLYS265
DLYS265
ELYS265
FLYS265
GLYS265
HLYS265

site_idSWS_FT_FI15
Number of Residues8
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P52480
ChainResidueDetails
ALYS269
BLYS269
CLYS269
DLYS269
ELYS269
FLYS269
GLYS269
HLYS269

site_idSWS_FT_FI16
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P52480
ChainResidueDetails
ALYS474
BLYS474
CLYS474
DLYS474
ELYS474
FLYS474
GLYS474
HLYS474

site_idSWS_FT_FI17
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS114
BLYS114
CLYS114
DLYS114
ELYS114
FLYS114
GLYS114
HLYS114

site_idSWS_FT_FI18
Number of Residues24
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS265
ALYS269
BLYS265
BLYS269
CLYS265
CLYS269
DLYS265
DLYS269
ELYS265
ELYS269
FLYS265
FLYS269
GLYS265
GLYS269
HLYS265
HLYS269

site_idSWS_FT_FI19
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternate => ECO:0000250|UniProtKB:P14618
ChainResidueDetails
ALYS165
BLYS165
CLYS165
DLYS165
ELYS165
FLYS165
GLYS165
HLYS165

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
AARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
AARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
ALYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
ATHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA2
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
BARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
BARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
BLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
BTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA3
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
CARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
CARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
CLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
CTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA4
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
DARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
DARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
DLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
DTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA5
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
EARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
EARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
ELYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
ETHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA6
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
FARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
FARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
FLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
FTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA7
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
GARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
GARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
GLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
GTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

site_idMCSA8
Number of Residues4
DetailsM-CSA 326
ChainResidueDetails
HARG72attractive charge-charge interaction, electrostatic stabiliser, steric role
HARG119attractive charge-charge interaction, electrostatic stabiliser, steric role
HLYS269attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, steric role
HTHR327electrostatic stabiliser, hydrogen bond donor, increase acidity

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon