7M15
crystal structure of cj1430 in the presence of GDP-D-glycero-L-gluco-heptose, a GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from campylobacter jejuni
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005829 | cellular_component | cytosol |
A | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
A | 0016853 | molecular_function | isomerase activity |
A | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
A | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
B | 0005829 | cellular_component | cytosol |
B | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
B | 0016853 | molecular_function | isomerase activity |
B | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
B | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
C | 0005829 | cellular_component | cytosol |
C | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
C | 0016853 | molecular_function | isomerase activity |
C | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
C | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
D | 0005829 | cellular_component | cytosol |
D | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
D | 0016853 | molecular_function | isomerase activity |
D | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
D | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
E | 0005829 | cellular_component | cytosol |
E | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
E | 0016853 | molecular_function | isomerase activity |
E | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
E | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
F | 0005829 | cellular_component | cytosol |
F | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
F | 0016853 | molecular_function | isomerase activity |
F | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
F | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 34 |
Details | binding site for residue YO7 A 201 |
Chain | Residue |
A | LYS54 |
A | TYR142 |
A | ASP144 |
A | ALA145 |
A | GLN148 |
A | ARG172 |
A | HOH307 |
A | HOH309 |
A | HOH310 |
A | HOH316 |
A | HOH328 |
A | ARG64 |
A | HOH336 |
A | HOH341 |
A | HOH349 |
A | HOH359 |
A | HOH371 |
A | HOH387 |
A | HOH389 |
B | HIS0 |
B | MET1 |
B | ASN22 |
A | GLY65 |
B | PHE24 |
B | ARG28 |
B | ILE31 |
B | TRP32 |
B | THR33 |
A | HIS67 |
A | LYS74 |
A | ASN121 |
A | HIS123 |
A | TYR132 |
A | TYR134 |
site_id | AC2 |
Number of Residues | 33 |
Details | binding site for residue YO7 B 201 |
Chain | Residue |
A | HIS0 |
A | MET1 |
A | ASN22 |
A | PHE24 |
A | ARG28 |
A | ILE31 |
A | TRP32 |
A | THR33 |
A | HOH324 |
B | LYS54 |
B | ARG64 |
B | GLY65 |
B | HIS67 |
B | LYS74 |
B | ASN121 |
B | HIS123 |
B | TYR132 |
B | TYR134 |
B | TYR142 |
B | ASP144 |
B | ALA145 |
B | GLN148 |
B | ARG172 |
B | HOH308 |
B | HOH313 |
B | HOH320 |
B | HOH321 |
B | HOH322 |
B | HOH336 |
B | HOH352 |
B | HOH368 |
B | HOH383 |
B | HOH403 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue EDO B 202 |
Chain | Residue |
A | HIS59 |
B | GLU30 |
B | HOH306 |
B | HOH346 |
C | LYS11 |
site_id | AC4 |
Number of Residues | 32 |
Details | binding site for residue YO7 C 201 |
Chain | Residue |
D | ARG28 |
D | ILE31 |
D | TRP32 |
D | THR33 |
D | HOH346 |
C | LYS54 |
C | ARG64 |
C | HIS67 |
C | LYS74 |
C | ASN121 |
C | HIS123 |
C | TYR132 |
C | TYR134 |
C | ASP144 |
C | GLN148 |
C | ARG172 |
C | HOH301 |
C | HOH307 |
C | HOH320 |
C | HOH323 |
C | HOH337 |
C | HOH340 |
C | HOH342 |
C | HOH344 |
C | HOH362 |
C | HOH371 |
C | HOH375 |
C | HOH403 |
D | MET1 |
D | ILE3 |
D | ASN22 |
D | PHE24 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue EDO C 202 |
Chain | Residue |
B | LYS11 |
C | GLY29 |
C | GLU30 |
C | HOH315 |
D | ASN57 |
D | HIS59 |
site_id | AC6 |
Number of Residues | 31 |
Details | binding site for residue YO7 D 201 |
Chain | Residue |
C | HIS0 |
C | MET1 |
C | ASN22 |
C | PHE24 |
C | ARG28 |
C | ILE31 |
C | TRP32 |
C | THR33 |
C | HOH328 |
D | LYS54 |
D | ARG64 |
D | GLY65 |
D | HIS67 |
D | LYS74 |
D | ASN121 |
D | HIS123 |
D | TYR132 |
D | TYR134 |
D | ASP144 |
D | GLN148 |
D | ARG172 |
D | HOH308 |
D | HOH309 |
D | HOH315 |
D | HOH326 |
D | HOH332 |
D | HOH352 |
D | HOH357 |
D | HOH358 |
D | HOH359 |
D | HOH372 |
site_id | AC7 |
Number of Residues | 29 |
Details | binding site for residue YO7 E 201 |
Chain | Residue |
E | LYS54 |
E | ARG64 |
E | HIS67 |
E | LYS74 |
E | ASN121 |
E | HIS123 |
E | TYR132 |
E | TYR134 |
E | TYR142 |
E | ASP144 |
E | GLN148 |
E | ARG172 |
E | HOH301 |
E | HOH311 |
E | HOH317 |
E | HOH320 |
E | HOH336 |
E | HOH339 |
E | HOH364 |
E | HOH373 |
F | HIS0 |
F | MET1 |
F | ASN22 |
F | PHE24 |
F | ARG28 |
F | ILE31 |
F | TRP32 |
F | THR33 |
F | HOH358 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue EDO E 202 |
Chain | Residue |
A | ASP147 |
E | CYS90 |
E | LYS92 |
E | ASP93 |
E | EDO203 |
E | HOH354 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue EDO E 203 |
Chain | Residue |
E | CYS90 |
E | ASN118 |
E | PHE149 |
E | TYR151 |
E | EDO202 |
site_id | AD1 |
Number of Residues | 33 |
Details | binding site for residue YO7 F 201 |
Chain | Residue |
E | HIS0 |
E | MET1 |
E | ASN22 |
E | LYS23 |
E | PHE24 |
E | ARG28 |
E | ILE31 |
E | THR33 |
E | HOH315 |
F | LYS54 |
F | ARG64 |
F | GLY65 |
F | HIS67 |
F | LYS74 |
F | ASN121 |
F | HIS123 |
F | TYR132 |
F | TYR134 |
F | TYR142 |
F | ASP144 |
F | GLN148 |
F | ARG172 |
F | HOH309 |
F | HOH313 |
F | HOH319 |
F | HOH326 |
F | HOH328 |
F | HOH334 |
F | HOH335 |
F | HOH348 |
F | HOH357 |
F | HOH364 |
F | HOH390 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue EDO F 202 |
Chain | Residue |
D | LYS11 |
E | GLU30 |
F | HIS59 |