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6Z1A

Ternary complex of Staphylococcus aureus DNA gyrase with AMK12 and DNA

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006259biological_processDNA metabolic process
B0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006259biological_processDNA metabolic process
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue EPE B 1701
ChainResidue
BASN1182
BGLN1267
BVAL1268
BASN1269
BARG1272
BPRO1326
EDC3
EDC4

site_idAC2
Number of Residues6
Detailsbinding site for residue MN B 1702
ChainResidue
BASP510
BHOH1815
BHOH1834
BHOH1861
BHOH1869
BASP508

site_idAC3
Number of Residues2
Detailsbinding site for residue DMS D 1601
ChainResidue
DGLN1267
FDC4

site_idAC4
Number of Residues4
Detailsbinding site for residue DMS D 1602
ChainResidue
DARG630
DMET1179
DPRO1343
DHOH1791

site_idAC5
Number of Residues9
Detailsbinding site for residue EPE D 1603
ChainResidue
DASN1182
DGLN1267
DVAL1268
DASN1269
DARG1272
DPRO1326
DHOH1792
FDC3
FDC4

site_idAC6
Number of Residues1
Detailsbinding site for residue CL D 1604
ChainResidue
DARG1429

site_idAC7
Number of Residues6
Detailsbinding site for residue MN D 1605
ChainResidue
DGLU435
DASP508
DHOH1705
DHOH1777
FDG8
HDG2009

site_idAC8
Number of Residues7
Detailsbinding site for residue MN D 1606
ChainResidue
DHIS1390
DHOH1836
DHOH1840
DHOH1853
EDA1
EHOH1702
EHOH1707

site_idAC9
Number of Residues1
Detailsbinding site for residue DMS E 1601
ChainResidue
EDC4

site_idAD1
Number of Residues8
Detailsbinding site for residue Q52 G 2101
ChainResidue
BASP1083
BMET1121
DALA1068
DASP1083
GDT2010
GDA2011
HDT2010
HDA2011

site_idAD2
Number of Residues6
Detailsbinding site for residue MN G 2102
ChainResidue
EHOH1704
EHOH1708
GDG2009
GHOH2201
GHOH2204
GHOH2208

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BASP510
DGLU435
DASP508
DASP510
BASP508
BGLU435

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
DLYS460
DASN463
BLYS460
BASN463

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897
ChainResidueDetails
BPHE1123
DPHE1123

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PDB entries from 2024-06-12

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