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6WSJ

Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
IU2M5

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH971
AHOH1012

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 804
ChainResidue
AALA641
APHE642
APHE643
AASN645
IDAR4
IHOH103

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 805
ChainResidue
AGLU624
AASP652
ALYS653
AVAL654
AGLY655
ALEU656
AARG660
AHOH1040

site_idAC6
Number of Residues27
Detailsbinding site for des4.3.1 chain I
ChainResidue
AHIS463
APRO464
ASER531
AHIS573
AHIS574
AGLY582
APHE583
AARG601
ALEU604
AASP612
AHIS614
APHE643
AASN645
AGLU696
AASP705
AARG736
AGLY743
ATYR745
AZN801
AEDO804
AHOH936
AHOH992
IHOH101
IHOH102
IHOH103
IHOH104
IHOH105

221051

PDB entries from 2024-06-12

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