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6WE9

YTH domain of human YTHDC1 with 11mer ssDNA Containing N6mA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
C0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO A 601
ChainResidue
AHIS365
ASER369
ALYS372
AGLN410
AEDO604
AHOH706
AHOH762

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO A 602
ChainResidue
AHOH701
AHOH719
AHIS420
AHIS421

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 603
ChainResidue
AASN363
APRO431
AALA432
AHOH708

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 604
ChainResidue
AHIS365
ASER406
ALYS408
AGLN410
AARG451
AGLU452
AEDO601

site_idAC5
Number of Residues2
Detailsbinding site for residue EDO A 605
ChainResidue
AARG404
AARG475

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 607
ChainResidue
APHE391
AARG392
AALA394

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL A 608
ChainResidue
AARG475
AASP476
AGLY477
AGLN478
AHOH704

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 609
ChainResidue
ALEU461
ATHR462
AGLU481
AGLU483
ACYS484

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 610
ChainResidue
ATRP465
BHOH105

site_idAD1
Number of Residues27
Detailsbinding site for Di-nucleotide DG B 5 and 6MA B 6
ChainResidue
ALYS361
ASER362
AASN363
AASN367
ATRP377
ASER378
ALEU380
APRO381
ATRP428
AHIS468
AASP476
AHOH710
AHOH764
AHOH781
BDC3
BDG4
BDC7
BHOH103
BHOH105
BHOH107
BHOH108
BHOH109
BHOH111
BHOH113
BHOH114
BHOH117
BHOH119

site_idAD2
Number of Residues23
Detailsbinding site for Di-nucleotide 6MA B 6 and DC B 7
ChainResidue
ALYS361
ASER362
AASN363
AASN367
ATRP377
ASER378
ALEU380
ATRP428
AILE473
AGLY474
AARG475
AASP476
AHOH710
AHOH739
AHOH764
AHOH781
BDG5
BDT8
BHOH104
BHOH110
BHOH113
BHOH115
BHOH117

site_idAD3
Number of Residues13
Detailsbinding site for Di-nucleotide DG F 5 and 6MA F 6
ChainResidue
CASP476
FDG4
FDC7
BDT10
BDG11
CLYS361
CASN363
CTRP377
CSER378
CTHR379
CALA432
CGLY433
CMET438

site_idAD4
Number of Residues12
Detailsbinding site for Di-nucleotide 6MA F 6 and DC F 7
ChainResidue
CLYS361
CASN363
CTRP377
CSER378
CTHR379
CILE473
CGLY474
CARG475
CASP476
FDG5
FDT8
FHOH103

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
CLYS361
CASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
CTRP377
ATRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
CTRP428
ATRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
CSER424
ASER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
CSER435
ASER435

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PDB entries from 2024-06-12

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