| Chain | GOid | namespace | contents |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0001658 | biological_process | branching involved in ureteric bud morphogenesis |
| A | 0001701 | biological_process | in utero embryonic development |
| A | 0001709 | biological_process | cell fate determination |
| A | 0001841 | biological_process | neural tube formation |
| A | 0001843 | biological_process | neural tube closure |
| A | 0003007 | biological_process | heart morphogenesis |
| A | 0005113 | molecular_function | patched binding |
| A | 0005119 | molecular_function | smoothened binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005794 | cellular_component | Golgi apparatus |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0005901 | cellular_component | caveola |
| A | 0005929 | cellular_component | cilium |
| A | 0007165 | biological_process | signal transduction |
| A | 0007224 | biological_process | smoothened signaling pathway |
| A | 0007286 | biological_process | spermatid development |
| A | 0007346 | biological_process | regulation of mitotic cell cycle |
| A | 0007389 | biological_process | pattern specification process |
| A | 0007420 | biological_process | brain development |
| A | 0008158 | molecular_function | hedgehog receptor activity |
| A | 0008201 | molecular_function | heparin binding |
| A | 0008285 | biological_process | negative regulation of cell population proliferation |
| A | 0008544 | biological_process | epidermis development |
| A | 0008589 | biological_process | regulation of smoothened signaling pathway |
| A | 0009410 | biological_process | response to xenobiotic stimulus |
| A | 0009612 | biological_process | response to mechanical stimulus |
| A | 0009887 | biological_process | animal organ morphogenesis |
| A | 0009953 | biological_process | dorsal/ventral pattern formation |
| A | 0009957 | biological_process | epidermal cell fate specification |
| A | 0010157 | biological_process | response to chlorate |
| A | 0010839 | biological_process | negative regulation of keratinocyte proliferation |
| A | 0010875 | biological_process | positive regulation of cholesterol efflux |
| A | 0014070 | biological_process | response to organic cyclic compound |
| A | 0015485 | molecular_function | cholesterol binding |
| A | 0016020 | cellular_component | membrane |
| A | 0016485 | biological_process | protein processing |
| A | 0021522 | biological_process | spinal cord motor neuron differentiation |
| A | 0021532 | biological_process | neural tube patterning |
| A | 0021904 | biological_process | dorsal/ventral neural tube patterning |
| A | 0021997 | biological_process | neural plate axis specification |
| A | 0030326 | biological_process | embryonic limb morphogenesis |
| A | 0030332 | molecular_function | cyclin binding |
| A | 0030496 | cellular_component | midbody |
| A | 0030666 | cellular_component | endocytic vesicle membrane |
| A | 0030850 | biological_process | prostate gland development |
| A | 0030879 | biological_process | mammary gland development |
| A | 0032355 | biological_process | response to estradiol |
| A | 0032526 | biological_process | response to retinoic acid |
| A | 0032880 | biological_process | regulation of protein localization |
| A | 0035108 | biological_process | limb morphogenesis |
| A | 0035137 | biological_process | hindlimb morphogenesis |
| A | 0040008 | biological_process | regulation of growth |
| A | 0040015 | biological_process | negative regulation of multicellular organism growth |
| A | 0042127 | biological_process | regulation of cell population proliferation |
| A | 0042593 | biological_process | glucose homeostasis |
| A | 0043231 | cellular_component | intracellular membrane-bounded organelle |
| A | 0043433 | biological_process | negative regulation of DNA-binding transcription factor activity |
| A | 0043616 | biological_process | keratinocyte proliferation |
| A | 0044294 | cellular_component | dendritic growth cone |
| A | 0044295 | cellular_component | axonal growth cone |
| A | 0044877 | molecular_function | protein-containing complex binding |
| A | 0045177 | cellular_component | apical part of cell |
| A | 0045606 | biological_process | positive regulation of epidermal cell differentiation |
| A | 0045668 | biological_process | negative regulation of osteoblast differentiation |
| A | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| A | 0048471 | cellular_component | perinuclear region of cytoplasm |
| A | 0048568 | biological_process | embryonic organ development |
| A | 0048745 | biological_process | smooth muscle tissue development |
| A | 0050673 | biological_process | epithelial cell proliferation |
| A | 0050680 | biological_process | negative regulation of epithelial cell proliferation |
| A | 0051782 | biological_process | negative regulation of cell division |
| A | 0060037 | biological_process | pharyngeal system development |
| A | 0060170 | cellular_component | ciliary membrane |
| A | 0060603 | biological_process | mammary gland duct morphogenesis |
| A | 0060644 | biological_process | mammary gland epithelial cell differentiation |
| A | 0061005 | biological_process | cell differentiation involved in kidney development |
| A | 0061053 | biological_process | somite development |
| A | 0071397 | biological_process | cellular response to cholesterol |
| A | 0071679 | biological_process | commissural neuron axon guidance |
| A | 0072089 | biological_process | stem cell proliferation |
| A | 0072203 | biological_process | cell proliferation involved in metanephros development |
| A | 0072205 | biological_process | metanephric collecting duct development |
| A | 0072659 | biological_process | protein localization to plasma membrane |
| A | 0097108 | molecular_function | hedgehog family protein binding |
| A | 0097421 | biological_process | liver regeneration |
| A | 2000647 | biological_process | negative regulation of stem cell proliferation |
