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6DHM

Bovine glutamate dehydrogenase complexed with zinc

Replaces:  3MVQReplaces:  1CH6Replaces:  1HWXReplaces:  3MW9
Functional Information from GO Data
ChainGOidnamespacecontents
A0004352molecular_functionglutamate dehydrogenase (NAD+) activity
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005524molecular_functionATP binding
A0005525molecular_functionGTP binding
A0005739cellular_componentmitochondrion
A0005743cellular_componentmitochondrial inner membrane
A0005783cellular_componentendoplasmic reticulum
A0006520biological_processamino acid metabolic process
A0006538biological_processglutamate catabolic process
A0006541biological_processglutamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
A0042802molecular_functionidentical protein binding
A0072350biological_processtricarboxylic acid metabolic process
B0004352molecular_functionglutamate dehydrogenase (NAD+) activity
B0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
B0004354molecular_functionglutamate dehydrogenase (NADP+) activity
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005739cellular_componentmitochondrion
B0005743cellular_componentmitochondrial inner membrane
B0005783cellular_componentendoplasmic reticulum
B0006520biological_processamino acid metabolic process
B0006538biological_processglutamate catabolic process
B0006541biological_processglutamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
B0042802molecular_functionidentical protein binding
B0072350biological_processtricarboxylic acid metabolic process
C0004352molecular_functionglutamate dehydrogenase (NAD+) activity
C0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
C0004354molecular_functionglutamate dehydrogenase (NADP+) activity
C0005524molecular_functionATP binding
C0005525molecular_functionGTP binding
C0005739cellular_componentmitochondrion
C0005743cellular_componentmitochondrial inner membrane
C0005783cellular_componentendoplasmic reticulum
C0006520biological_processamino acid metabolic process
C0006538biological_processglutamate catabolic process
C0006541biological_processglutamine metabolic process
C0016491molecular_functionoxidoreductase activity
C0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
C0042802molecular_functionidentical protein binding
C0072350biological_processtricarboxylic acid metabolic process
D0004352molecular_functionglutamate dehydrogenase (NAD+) activity
D0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
D0004354molecular_functionglutamate dehydrogenase (NADP+) activity
D0005524molecular_functionATP binding
D0005525molecular_functionGTP binding
D0005739cellular_componentmitochondrion
D0005743cellular_componentmitochondrial inner membrane
D0005783cellular_componentendoplasmic reticulum
D0006520biological_processamino acid metabolic process
D0006538biological_processglutamate catabolic process
D0006541biological_processglutamine metabolic process
D0016491molecular_functionoxidoreductase activity
D0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
D0042802molecular_functionidentical protein binding
D0072350biological_processtricarboxylic acid metabolic process
E0004352molecular_functionglutamate dehydrogenase (NAD+) activity
E0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
E0004354molecular_functionglutamate dehydrogenase (NADP+) activity
E0005524molecular_functionATP binding
E0005525molecular_functionGTP binding
E0005739cellular_componentmitochondrion
E0005743cellular_componentmitochondrial inner membrane
E0005783cellular_componentendoplasmic reticulum
E0006520biological_processamino acid metabolic process
E0006538biological_processglutamate catabolic process
E0006541biological_processglutamine metabolic process
E0016491molecular_functionoxidoreductase activity
E0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
E0042802molecular_functionidentical protein binding
E0072350biological_processtricarboxylic acid metabolic process
F0004352molecular_functionglutamate dehydrogenase (NAD+) activity
F0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
F0004354molecular_functionglutamate dehydrogenase (NADP+) activity
F0005524molecular_functionATP binding
F0005525molecular_functionGTP binding
F0005739cellular_componentmitochondrion
F0005743cellular_componentmitochondrial inner membrane
F0005783cellular_componentendoplasmic reticulum
F0006520biological_processamino acid metabolic process
F0006538biological_processglutamate catabolic process
F0006541biological_processglutamine metabolic process
F0016491molecular_functionoxidoreductase activity
F0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
F0042802molecular_functionidentical protein binding
F0072350biological_processtricarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue GLU A 601
ChainResidue
ALYS90
AASN349
AVAL378
ASER381
ANDP602
AGLY92
AMET111
ALYS114
ALYS126
AALA166
APRO167
AASP168
AARG211

site_idAC2
Number of Residues19
Detailsbinding site for residue NDP A 602
ChainResidue
AARG94
AASP168
AMET169
ASER170
AARG211
AGLN250
AGLY251
APHE252
AGLY253
AASN254
AVAL255
AGLU275
ASER276
AALA326
AGLY347
AALA348
AASN349
AASN374
AGLU601

site_idAC3
Number of Residues13
Detailsbinding site for residue GTP A 603
ChainResidue
AHIS209
AGLY210
ASER213
AARG217
AHIS258
AARG261
ATYR262
AARG265
ALYS289
AGLU292
ALYS446
AHIS450
AZN605

site_idAC4
Number of Residues2
Detailsbinding site for residue ZN A 604
ChainResidue
AGLU151
DHIS57

site_idAC5
Number of Residues3
Detailsbinding site for residue ZN A 605
ChainResidue
AHIS209
AHIS450
AGTP603

site_idAC6
Number of Residues14
Detailsbinding site for residue GLU B 601
ChainResidue
BLYS90
BGLY91
BGLY92
BMET111
BLYS114
BLYS126
BALA166
BPRO167
BASP168
BARG211
BASN349
BVAL378
BSER381
BNDP602

site_idAC7
Number of Residues20
Detailsbinding site for residue NDP B 602
ChainResidue
BARG94
BASP168
BMET169
BSER170
BARG211
BTHR215
BGLY251
BPHE252
BGLY253
BASN254
BVAL255
BGLU275
BSER276
BALA325
BALA326
BGLN330
BALA348
BASN349
BASN374
BGLU601

site_idAC8
Number of Residues13
Detailsbinding site for residue GTP B 603
ChainResidue
BHIS209
BGLY210
BSER213
BARG217
BHIS258
BARG261
BTYR262
BARG265
BLYS289
BGLU292
BLYS446
BHIS450
BZN605

site_idAC9
Number of Residues2
Detailsbinding site for residue ZN B 604
ChainResidue
BGLU151
EHIS57

site_idAD1
Number of Residues3
Detailsbinding site for residue ZN B 605
ChainResidue
BHIS209
BHIS450
BGTP603

site_idAD2
Number of Residues14
Detailsbinding site for residue GLU C 601
ChainResidue
CLYS90
CGLY91
CGLY92
CMET111
CLYS114
CLYS126
CALA166
CPRO167
CASP168
CARG211
CASN349
CVAL378
CSER381
CNDP602

site_idAD3
Number of Residues22
Detailsbinding site for residue NDP C 602
ChainResidue
CARG94
CASP168
CMET169
CSER170
CARG211
CTHR215
CGLN250
CGLY251
CPHE252
CGLY253
CASN254
CVAL255
CGLU275
CSER276
CALA325
CALA326
CSER327
CGLN330
CGLY347
CASN349
CASN374
CGLU601

site_idAD4
Number of Residues12
Detailsbinding site for residue GTP C 603
ChainResidue
CHIS209
CGLY210
CSER213
CARG217
CHIS258
CARG261
CTYR262
CARG265
CLYS289
CGLU292
CHIS450
CZN605

site_idAD5
Number of Residues3
Detailsbinding site for residue ZN C 604
ChainResidue
CGLU151
CLYS154
FHIS57

site_idAD6
Number of Residues3
Detailsbinding site for residue ZN C 605
ChainResidue
CHIS209
CHIS450
CGTP603

site_idAD7
Number of Residues15
Detailsbinding site for residue GLU D 601
ChainResidue
DLYS90
DGLY91
DGLY92
DMET111
DLYS114
DLYS126
DALA166
DPRO167
DASP168
DARG211
DASN349
DGLY377
DVAL378
DSER381
DNDP602

site_idAD8
Number of Residues20
Detailsbinding site for residue NDP D 602
ChainResidue
DALA1
DASP168
DMET169
DSER170
DARG211
DGLN250
DPHE252
DGLY253
DASN254
DVAL255
DGLU275
DSER276
DALA326
DSER327
DGLN330
DGLY347
DALA348
DASN349
DASN374
DGLU601

site_idAD9
Number of Residues13
Detailsbinding site for residue GTP D 603
ChainResidue
DHIS209
DGLY210
DSER213
DARG217
DLEU257
DHIS258
DARG261
DTYR262
DARG265
DLYS289
DGLU292
DHIS450
DZN605

site_idAE1
Number of Residues2
Detailsbinding site for residue ZN D 604
ChainResidue
AHIS57
DGLU151

site_idAE2
Number of Residues4
Detailsbinding site for residue ZN D 605
ChainResidue
DHIS209
DARG217
DHIS450
DGTP603

site_idAE3
Number of Residues13
Detailsbinding site for residue GLU E 601
ChainResidue
ELYS90
EGLY92
EMET111
ELYS114
ELYS126
EALA166
EPRO167
EASP168
EARG211
EASN349
EVAL378
ESER381
ENDP602

site_idAE4
Number of Residues21
Detailsbinding site for residue NDP E 602
ChainResidue
EPRO167
EASP168
EMET169
ESER170
EARG211
ETHR215
EGLN250
EGLY251
EPHE252
EGLY253
EASN254
EVAL255
EGLU275
ESER276
EALA325
EALA326
EGLN330
EALA348
EASN349
EASN374
EGLU601

site_idAE5
Number of Residues13
Detailsbinding site for residue GTP E 603
ChainResidue
EHIS209
EGLY210
ESER213
EARG217
EHIS258
EARG261
ETYR262
EARG265
ELYS289
EGLU292
ELYS446
EHIS450
EZN605

site_idAE6
Number of Residues3
Detailsbinding site for residue ZN E 604
ChainResidue
BHIS57
EGLU151
ELYS154

site_idAE7
Number of Residues3
Detailsbinding site for residue ZN E 605
ChainResidue
EHIS209
EHIS450
EGTP603

site_idAE8
Number of Residues3
Detailsbinding site for residue ZN F 601
ChainResidue
CHIS57
FGLU151
FLYS154

site_idAE9
Number of Residues12
Detailsbinding site for residue GLU F 602
ChainResidue
FLYS90
FGLY91
FMET111
FLYS114
FLYS126
FALA166
FPRO167
FASP168
FARG211
FASN349
FSER381
FNDP603

site_idAF1
Number of Residues23
Detailsbinding site for residue NDP F 603
ChainResidue
FARG94
FLYS134
FASP168
FMET169
FSER170
FARG211
FTHR215
FGLN250
FGLY251
FPHE252
FGLY253
FASN254
FVAL255
FGLU275
FSER276
FALA325
FALA326
FGLN330
FGLY347
FALA348
FASN349
FASN374
FGLU602

site_idAF2
Number of Residues14
Detailsbinding site for residue GTP F 604
ChainResidue
FHIS209
FGLY210
FSER213
FARG217
FLEU257
FHIS258
FARG261
FTYR262
FARG265
FLYS289
FGLU292
FLYS446
FHIS450
FZN605

site_idAF3
Number of Residues3
Detailsbinding site for residue ZN F 605
ChainResidue
FHIS209
FHIS450
FGTP604

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. VpfGGAKaGvkiNP
ChainResidueDetails
AVAL120-PRO133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10011
ChainResidueDetails
ALYS126
BLYS126
CLYS126
DLYS126
ELYS126
FLYS126

site_idSWS_FT_FI2
Number of Residues66
DetailsBINDING: BINDING => ECO:0000269|PubMed:11254391
ChainResidueDetails
AGLN84
ASER381
ALYS387
BGLN84
BLYS90
BLYS114
BASP119
BHIS195
BHIS209
BSER213
BTYR262
ALYS90
BARG265
BSER381
BLYS387
CGLN84
CLYS90
CLYS114
CASP119
CHIS195
CHIS209
CSER213
ALYS114
CTYR262
CARG265
CSER381
CLYS387
DGLN84
DLYS90
DLYS114
DASP119
DHIS195
DHIS209
AASP119
DSER213
DTYR262
DARG265
DSER381
DLYS387
EGLN84
ELYS90
ELYS114
EASP119
EHIS195
AHIS195
EHIS209
ESER213
ETYR262
EARG265
ESER381
ELYS387
FGLN84
FLYS90
FLYS114
FASP119
AHIS209
FHIS195
FHIS209
FSER213
FTYR262
FARG265
FSER381
FLYS387
ASER213
ATYR262
AARG265

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:12653548
ChainResidueDetails
ASER393
EARG459
FSER393
FARG459
AARG459
BSER393
BARG459
CSER393
CARG459
DSER393
DARG459
ESER393

site_idSWS_FT_FI4
Number of Residues12
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ALYS11
ELYS143
FLYS11
FLYS143
ALYS143
BLYS11
BLYS143
CLYS11
CLYS143
DLYS11
DLYS143
ELYS11

site_idSWS_FT_FI5
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ASER22
ESER71
FSER22
FSER71
ASER71
BSER22
BSER71
CSER22
CSER71
DSER22
DSER71
ESER22

site_idSWS_FT_FI6
Number of Residues54
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22076378
ChainResidueDetails
ALYS27
BLYS27
BLYS53
BLYS105
BLYS306
BLYS358
BLYS400
BLYS446
BLYS470
BLYS488
CLYS27
ALYS53
CLYS53
CLYS105
CLYS306
CLYS358
CLYS400
CLYS446
CLYS470
CLYS488
DLYS27
DLYS53
ALYS105
DLYS105
DLYS306
DLYS358
DLYS400
DLYS446
DLYS470
DLYS488
ELYS27
ELYS53
ELYS105
ALYS306
ELYS306
ELYS358
ELYS400
ELYS446
ELYS470
ELYS488
FLYS27
FLYS53
FLYS105
FLYS306
ALYS358
FLYS358
FLYS400
FLYS446
FLYS470
FLYS488
ALYS400
ALYS446
ALYS470
ALYS488

site_idSWS_FT_FI7
Number of Residues18
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22076378
ChainResidueDetails
ALYS33
DLYS33
DLYS329
DLYS342
ELYS33
ELYS329
ELYS342
FLYS33
FLYS329
FLYS342
ALYS329
ALYS342
BLYS33
BLYS329
BLYS342
CLYS33
CLYS329
CLYS342

site_idSWS_FT_FI8
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ATYR78
BTYR78
CTYR78
DTYR78
ETYR78
FTYR78

site_idSWS_FT_FI9
Number of Residues6
DetailsMOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ALYS90
BLYS90
CLYS90
DLYS90
ELYS90
FLYS90

site_idSWS_FT_FI10
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ALYS114
CLYS130
CLYS154
CLYS269
DLYS114
DLYS130
DLYS154
DLYS269
ELYS114
ELYS130
ELYS154
ALYS130
ELYS269
FLYS114
FLYS130
FLYS154
FLYS269
ALYS154
ALYS269
BLYS114
BLYS130
BLYS154
BLYS269
CLYS114

site_idSWS_FT_FI11
Number of Residues6
DetailsMOD_RES: ADP-ribosylcysteine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ACYS115
BCYS115
CCYS115
DCYS115
ECYS115
FCYS115

site_idSWS_FT_FI12
Number of Residues48
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ALYS126
BLYS134
BLYS289
BLYS295
BLYS308
BLYS333
BLYS420
BLYS423
CLYS126
CLYS134
CLYS289
ALYS134
CLYS295
CLYS308
CLYS333
CLYS420
CLYS423
DLYS126
DLYS134
DLYS289
DLYS295
DLYS308
ALYS289
DLYS333
DLYS420
DLYS423
ELYS126
ELYS134
ELYS289
ELYS295
ELYS308
ELYS333
ELYS420
ALYS295
ELYS423
FLYS126
FLYS134
FLYS289
FLYS295
FLYS308
FLYS333
FLYS420
FLYS423
ALYS308
ALYS333
ALYS420
ALYS423
BLYS126

site_idSWS_FT_FI13
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ASER170
ESER327
FSER170
FSER327
ASER327
BSER170
BSER327
CSER170
CSER327
DSER170
DSER327
ESER170

site_idSWS_FT_FI14
Number of Residues6
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P10860
ChainResidueDetails
ATHR353
BTHR353
CTHR353
DTHR353
ETHR353
FTHR353

site_idSWS_FT_FI15
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ATYR455
BTYR455
CTYR455
DTYR455
ETYR455
FTYR455

219140

PDB entries from 2024-05-01

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