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5CIW

Ran GDP Y39A mutant monoclinic crystal form

Functional Information from GO Data
ChainGOidnamespacecontents
A0000054biological_processribosomal subunit export from nucleus
A0000055biological_processribosomal large subunit export from nucleus
A0000056biological_processribosomal small subunit export from nucleus
A0000070biological_processmitotic sister chromatid segregation
A0000278biological_processmitotic cell cycle
A0000287molecular_functionmagnesium ion binding
A0000785cellular_componentchromatin
A0001673cellular_componentmale germ cell nucleus
A0002177cellular_componentmanchette
A0003682molecular_functionchromatin binding
A0003723molecular_functionRNA binding
A0003924molecular_functionGTPase activity
A0003925molecular_functionG protein activity
A0005049molecular_functionnuclear export signal receptor activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005634cellular_componentnucleus
A0005635cellular_componentnuclear envelope
A0005643cellular_componentnuclear pore
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005814cellular_componentcentriole
A0005829cellular_componentcytosol
A0006259biological_processDNA metabolic process
A0006606biological_processprotein import into nucleus
A0006611biological_processprotein export from nucleus
A0006913biological_processnucleocytoplasmic transport
A0007052biological_processmitotic spindle organization
A0007286biological_processspermatid development
A0008104biological_processprotein localization
A0014070biological_processresponse to organic cyclic compound
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0016032biological_processviral process
A0016787molecular_functionhydrolase activity
A0019003molecular_functionGDP binding
A0019904molecular_functionprotein domain specific binding
A0021766biological_processhippocampus development
A0030036biological_processactin cytoskeleton organization
A0030496cellular_componentmidbody
A0031503biological_processprotein-containing complex localization
A0032092biological_processpositive regulation of protein binding
A0032991cellular_componentprotein-containing complex
A0035281biological_processpre-miRNA export from nucleus
A0036126cellular_componentsperm flagellum
A0042307biological_processpositive regulation of protein import into nucleus
A0042470cellular_componentmelanosome
A0042565cellular_componentRNA nuclear export complex
A0044877molecular_functionprotein-containing complex binding
A0045296molecular_functioncadherin binding
A0045505molecular_functiondynein intermediate chain binding
A0046039biological_processGTP metabolic process
A0046872molecular_functionmetal ion binding
A0046982molecular_functionprotein heterodimerization activity
A0051301biological_processcell division
A0055037cellular_componentrecycling endosome
A0061015biological_processsnRNA import into nucleus
A0061676molecular_functionimportin-alpha family protein binding
A0070062cellular_componentextracellular exosome
A0070883molecular_functionpre-miRNA binding
A0071389biological_processcellular response to mineralocorticoid stimulus
A0090543cellular_componentFlemming body
A1902570biological_processprotein localization to nucleolus
B0000054biological_processribosomal subunit export from nucleus
B0000055biological_processribosomal large subunit export from nucleus
B0000056biological_processribosomal small subunit export from nucleus
B0000070biological_processmitotic sister chromatid segregation
B0000278biological_processmitotic cell cycle
B0000287molecular_functionmagnesium ion binding
B0000785cellular_componentchromatin
B0001673cellular_componentmale germ cell nucleus
B0002177cellular_componentmanchette
B0003682molecular_functionchromatin binding
B0003723molecular_functionRNA binding
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005049molecular_functionnuclear export signal receptor activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005634cellular_componentnucleus
B0005635cellular_componentnuclear envelope
B0005643cellular_componentnuclear pore
B0005654cellular_componentnucleoplasm
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0005814cellular_componentcentriole
B0005829cellular_componentcytosol
B0006259biological_processDNA metabolic process
B0006606biological_processprotein import into nucleus
B0006611biological_processprotein export from nucleus
B0006913biological_processnucleocytoplasmic transport
B0007052biological_processmitotic spindle organization
B0007286biological_processspermatid development
B0008104biological_processprotein localization
B0014070biological_processresponse to organic cyclic compound
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0016032biological_processviral process
B0016787molecular_functionhydrolase activity
B0019003molecular_functionGDP binding
B0019904molecular_functionprotein domain specific binding
B0021766biological_processhippocampus development
B0030036biological_processactin cytoskeleton organization
B0030496cellular_componentmidbody
B0031503biological_processprotein-containing complex localization
B0032092biological_processpositive regulation of protein binding
B0032991cellular_componentprotein-containing complex
B0035281biological_processpre-miRNA export from nucleus
B0036126cellular_componentsperm flagellum
B0042307biological_processpositive regulation of protein import into nucleus
B0042470cellular_componentmelanosome
B0042565cellular_componentRNA nuclear export complex
B0044877molecular_functionprotein-containing complex binding
B0045296molecular_functioncadherin binding
B0045505molecular_functiondynein intermediate chain binding
B0046039biological_processGTP metabolic process
B0046872molecular_functionmetal ion binding
B0046982molecular_functionprotein heterodimerization activity
B0051301biological_processcell division
B0055037cellular_componentrecycling endosome
B0061015biological_processsnRNA import into nucleus
B0061676molecular_functionimportin-alpha family protein binding
B0070062cellular_componentextracellular exosome
B0070883molecular_functionpre-miRNA binding
B0071389biological_processcellular response to mineralocorticoid stimulus
B0090543cellular_componentFlemming body
B1902570biological_processprotein localization to nucleolus
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue GDP A 301
ChainResidue
AGLY20
AILE126
ASER150
AALA151
ALYS152
AMG302
AHOH401
AHOH416
AHOH418
AHOH424
AHOH443
ATHR21
AHOH454
BLYS127
AGLY22
ALYS23
ATHR24
ATHR25
AASN122
ALYS123
AASP125

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 302
ChainResidue
ATHR24
AGDP301
AHOH416
AHOH424
AHOH434
AHOH443

site_idAC3
Number of Residues6
Detailsbinding site for residue MG B 301
ChainResidue
BTHR24
BGDP302
BHOH406
BHOH409
BHOH415
BHOH421

site_idAC4
Number of Residues19
Detailsbinding site for residue GDP B 302
ChainResidue
BGLY20
BTHR21
BGLY22
BLYS23
BTHR24
BTHR25
BGLU70
BASN122
BLYS123
BASP125
BILE126
BSER150
BALA151
BLYS152
BMG301
BHOH406
BHOH409
BHOH410
BHOH421

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5G, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AASP18
BASP18

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AGLU36
BGLU36

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AGLY68
BGLY68

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1IBR, ECO:0007744|PDB:1K5D, ECO:0007744|PDB:1QBK, ECO:0007744|PDB:1RRP, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
AASN122
BASN122

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10078529, ECO:0000269|PubMed:10353245, ECO:0000269|PubMed:10367892, ECO:0000269|PubMed:11832950, ECO:0000269|PubMed:18611384, ECO:0000269|PubMed:19389996, ECO:0000269|PubMed:19505478, ECO:0000269|PubMed:24449914, ECO:0000269|PubMed:24915079, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:26349033, ECO:0000269|PubMed:28282025, ECO:0000269|PubMed:7885480, ECO:0007744|PDB:1K5G, ECO:0007744|PDB:3CH5, ECO:0007744|PDB:3GJ0, ECO:0007744|PDB:3GJ3, ECO:0007744|PDB:3GJ4, ECO:0007744|PDB:3GJ5, ECO:0007744|PDB:3GJ6, ECO:0007744|PDB:3GJ7, ECO:0007744|PDB:3GJ8, ECO:0007744|PDB:3GJX, ECO:0007744|PDB:3NBY, ECO:0007744|PDB:3NBZ, ECO:0007744|PDB:3NC0, ECO:0007744|PDB:3NC1, ECO:0007744|PDB:3ZJY, ECO:0007744|PDB:4C0Q, ECO:0007744|PDB:4OL0, ECO:0007744|PDB:5CIQ, ECO:0007744|PDB:5CIT, ECO:0007744|PDB:5CIW, ECO:0007744|PDB:5CJ2, ECO:0007744|PDB:5CLL, ECO:0007744|PDB:5CLQ, ECO:0007744|PDB:5DH9, ECO:0007744|PDB:5DHA, ECO:0007744|PDB:5DHF, ECO:0007744|PDB:5DI9, ECO:0007744|PDB:5DIF, ECO:0007744|PDB:5DIS, ECO:0007744|PDB:5DLQ, ECO:0007744|PDB:5JLJ, ECO:0007744|PDB:5UWH, ECO:0007744|PDB:5UWI, ECO:0007744|PDB:5UWJ, ECO:0007744|PDB:5UWO, ECO:0007744|PDB:5UWP, ECO:0007744|PDB:5UWQ, ECO:0007744|PDB:5UWR, ECO:0007744|PDB:5UWS, ECO:0007744|PDB:5UWT, ECO:0007744|PDB:5UWU, ECO:0007744|PDB:5UWW
ChainResidueDetails
ASER150
BSER150

site_idSWS_FT_FI6
Number of Residues2
DetailsSITE: Essential for GTP hydrolysis => ECO:0000269|PubMed:18591255, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:8636225
ChainResidueDetails
AGLN69
BGLN69

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0000269|Ref.12, ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378
ChainResidueDetails
AALA2
BALA2

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR24
BTHR24

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:31075303
ChainResidueDetails
ALYS37
BLYS37

site_idSWS_FT_FI10
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS60
ALYS99
BLYS60
BLYS99

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS71
BLYS71

site_idSWS_FT_FI12
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:29040603
ChainResidueDetails
ALYS134
BLYS134

site_idSWS_FT_FI13
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62827
ChainResidueDetails
ALYS159
BLYS159

site_idSWS_FT_FI14
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate
ChainResidueDetails
ALYS71
BLYS71

site_idSWS_FT_FI15
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS152
BLYS152

219140

PDB entries from 2024-05-01

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