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5B2T

Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM)

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0004520molecular_functionDNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0016787molecular_functionhydrolase activity
B0043571biological_processmaintenance of CRISPR repeat elements
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue K A 101
ChainResidue
AA65
AU66
AHOH206
AHOH310
AHOH337
BTHR1102
BHOH1740

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 102
ChainResidue
AHOH287
BGLN1350
BHOH1794
AA68
AHOH286

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 103
ChainResidue
AG21
AHOH263
AHOH285
AHOH312
AHOH370
AHOH379

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 104
ChainResidue
AU50
AHOH234
AHOH235
AHOH255
AHOH260
AHOH351
BHOH1769

site_idAC5
Number of Residues5
Detailsbinding site for residue MG A 105
ChainResidue
AG21
AHOH245
AHOH332
AHOH370
BHOH1879

site_idAC6
Number of Residues7
Detailsbinding site for residue MG A 106
ChainResidue
AG18
AG19
AHOH217
AHOH327
AHOH373
BARG71
BHOH1873

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 107
ChainResidue
AG62
AU63
AU64
AHOH204
AHOH272
AHOH323
BARG461

site_idAC8
Number of Residues3
Detailsbinding site for residue ACT A 108
ChainResidue
AU66
AC67
BARG1171

site_idAC9
Number of Residues5
Detailsbinding site for residue K B 1401
ChainResidue
BLEU623
BTHR624
BPHE626
BTYR656
CHOH127

site_idAD1
Number of Residues4
Detailsbinding site for residue K B 1402
ChainResidue
BGLY361
BTYR362
BGLY365
BALA367

site_idAD2
Number of Residues3
Detailsbinding site for residue K B 1403
ChainResidue
AU22
BASP364
BGLY365

site_idAD3
Number of Residues6
Detailsbinding site for residue K B 1404
ChainResidue
AHOH206
BGLU57
BHOH1656
BHOH1773
BHOH1848
BHOH1862

site_idAD4
Number of Residues4
Detailsbinding site for residue K B 1405
ChainResidue
BGLU108
BGLU109
BLYS111
BHOH1850

site_idAD5
Number of Residues3
Detailsbinding site for residue K B 1406
ChainResidue
BILE226
BLEU229
BGLU232

site_idAD6
Number of Residues4
Detailsbinding site for residue K B 1407
ChainResidue
BGLU584
BARG586
BASN588
BHOH1852

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO B 1408
ChainResidue
AA52
BPHE1105
BILE1168
BMET1169
BARG1171
BSER1172
BHOH1575
BHOH1690

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO B 1409
ChainResidue
BSER1277
BLYS1278
BLEU1282
BALA1283
BASP1284
BLEU1287

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO B 1410
ChainResidue
BVAL1139
BGLY1165
BARG1218
BHOH1734
DHOH103

site_idAE1
Number of Residues9
Detailsbinding site for residue EDO B 1411
ChainResidue
BHIS160
BASN407
BILE410
BHIS415
BHOH1550
AC20
AHOH281
BTYR136
BARG139

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA10

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA840

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24505130
ChainResidueDetails
BALA10
BGLU762
BGLU766
BHIS983
BHIS1297
BASP1328

218853

PDB entries from 2024-04-24

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