4UOY
Crystal structure of YgjG in complex with Pyridoxal-5'-phosphate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005829 | cellular_component | cytosol |
A | 0008483 | molecular_function | transaminase activity |
A | 0009447 | biological_process | putrescine catabolic process |
A | 0019161 | molecular_function | diamine transaminase activity |
A | 0019477 | biological_process | L-lysine catabolic process |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0033094 | molecular_function | putrescine--2-oxoglutarate transaminase activity |
A | 0042802 | molecular_function | identical protein binding |
A | 0042803 | molecular_function | protein homodimerization activity |
B | 0005829 | cellular_component | cytosol |
B | 0008483 | molecular_function | transaminase activity |
B | 0009447 | biological_process | putrescine catabolic process |
B | 0019161 | molecular_function | diamine transaminase activity |
B | 0019477 | biological_process | L-lysine catabolic process |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0033094 | molecular_function | putrescine--2-oxoglutarate transaminase activity |
B | 0042802 | molecular_function | identical protein binding |
B | 0042803 | molecular_function | protein homodimerization activity |
C | 0005829 | cellular_component | cytosol |
C | 0008483 | molecular_function | transaminase activity |
C | 0009447 | biological_process | putrescine catabolic process |
C | 0019161 | molecular_function | diamine transaminase activity |
C | 0019477 | biological_process | L-lysine catabolic process |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0033094 | molecular_function | putrescine--2-oxoglutarate transaminase activity |
C | 0042802 | molecular_function | identical protein binding |
C | 0042803 | molecular_function | protein homodimerization activity |
D | 0005829 | cellular_component | cytosol |
D | 0008483 | molecular_function | transaminase activity |
D | 0009447 | biological_process | putrescine catabolic process |
D | 0019161 | molecular_function | diamine transaminase activity |
D | 0019477 | biological_process | L-lysine catabolic process |
D | 0030170 | molecular_function | pyridoxal phosphate binding |
D | 0033094 | molecular_function | putrescine--2-oxoglutarate transaminase activity |
D | 0042802 | molecular_function | identical protein binding |
D | 0042803 | molecular_function | protein homodimerization activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE PLP A 800 |
Chain | Residue |
A | SER149 |
A | GLN274 |
A | LYS300 |
A | HOH2046 |
A | HOH2084 |
A | HOH2096 |
A | HOH2097 |
B | THR332 |
A | GLY150 |
A | THR151 |
A | PHE180 |
A | HIS181 |
A | GLY182 |
A | GLU238 |
A | ASP271 |
A | VAL273 |
site_id | AC2 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE PLP B 800 |
Chain | Residue |
A | THR332 |
A | HOH2028 |
A | HOH2030 |
B | SER149 |
B | GLY150 |
B | THR151 |
B | PHE180 |
B | HIS181 |
B | GLU238 |
B | ASP271 |
B | VAL273 |
B | GLN274 |
B | LYS300 |
B | HOH2057 |
B | HOH2065 |
site_id | AC3 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE PLP C 800 |
Chain | Residue |
C | SER149 |
C | GLY150 |
C | THR151 |
C | PHE180 |
C | HIS181 |
C | GLY182 |
C | GLU238 |
C | GLU243 |
C | ASP271 |
C | VAL273 |
C | GLN274 |
C | LYS300 |
C | HOH2042 |
C | HOH2058 |
C | HOH2077 |
C | HOH2106 |
D | THR331 |
D | THR332 |
site_id | AC4 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE PLP D 800 |
Chain | Residue |
C | THR332 |
C | HOH2041 |
C | HOH2044 |
D | SER149 |
D | GLY150 |
D | THR151 |
D | PHE180 |
D | HIS181 |
D | GLY182 |
D | GLU238 |
D | ASP271 |
D | VAL273 |
D | GLN274 |
D | LYS300 |
D | HOH2022 |
D | HOH2034 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE FMT A 1461 |
Chain | Residue |
A | GLN119 |
A | LEU121 |
A | ASP123 |
A | HOH2098 |
B | PHE50 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 1460 |
Chain | Residue |
A | PHE50 |
B | HIS117 |
B | GLN119 |
B | LEU121 |
B | ASP123 |
B | ARG126 |
B | HOH2075 |
Functional Information from PROSITE/UniProt
site_id | PS00600 |
Number of Residues | 38 |
Details | AA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. MIlDEVqt.GMgRtGkmfacehenvqp....DILclAKalgGG |
Chain | Residue | Details |
A | MET268-GLY305 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | BINDING: in other chain => ECO:0000269|PubMed:25423189 |
Chain | Residue | Details |
C | GLY150 | |
C | GLN274 | |
D | GLY150 | |
D | GLN274 | |
A | GLY150 | |
A | GLN274 | |
B | GLY150 | |
B | GLN274 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25423189 |
Chain | Residue | Details |
A | THR332 | |
B | THR332 | |
C | THR332 | |
D | THR332 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:25423189, ECO:0007744|PDB:4UOY |
Chain | Residue | Details |
A | LYS300 | |
B | LYS300 | |
C | LYS300 | |
D | LYS300 |