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4M6D

Crystal structure of the aptamer minF-lysozyme complex.

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
C0003796molecular_functionlysozyme activity
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005615cellular_componentextracellular space
C0005737cellular_componentcytoplasm
C0005783cellular_componentendoplasmic reticulum
C0016231molecular_functionbeta-N-acetylglucosaminidase activity
C0016798molecular_functionhydrolase activity, acting on glycosyl bonds
C0016998biological_processcell wall macromolecule catabolic process
C0031640biological_processkilling of cells of another organism
C0042742biological_processdefense response to bacterium
C0042802molecular_functionidentical protein binding
C0050829biological_processdefense response to Gram-negative bacterium
C0050830biological_processdefense response to Gram-positive bacterium
C0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
E0003796molecular_functionlysozyme activity
E0005515molecular_functionprotein binding
E0005576cellular_componentextracellular region
E0005615cellular_componentextracellular space
E0005737cellular_componentcytoplasm
E0005783cellular_componentendoplasmic reticulum
E0016231molecular_functionbeta-N-acetylglucosaminidase activity
E0016798molecular_functionhydrolase activity, acting on glycosyl bonds
E0016998biological_processcell wall macromolecule catabolic process
E0031640biological_processkilling of cells of another organism
E0042742biological_processdefense response to bacterium
E0042802molecular_functionidentical protein binding
E0050829biological_processdefense response to Gram-negative bacterium
E0050830biological_processdefense response to Gram-positive bacterium
E0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
G0003796molecular_functionlysozyme activity
G0005515molecular_functionprotein binding
G0005576cellular_componentextracellular region
G0005615cellular_componentextracellular space
G0005737cellular_componentcytoplasm
G0005783cellular_componentendoplasmic reticulum
G0016231molecular_functionbeta-N-acetylglucosaminidase activity
G0016798molecular_functionhydrolase activity, acting on glycosyl bonds
G0016998biological_processcell wall macromolecule catabolic process
G0031640biological_processkilling of cells of another organism
G0042742biological_processdefense response to bacterium
G0042802molecular_functionidentical protein binding
G0050829biological_processdefense response to Gram-negative bacterium
G0050830biological_processdefense response to Gram-positive bacterium
G0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
I0003796molecular_functionlysozyme activity
I0005515molecular_functionprotein binding
I0005576cellular_componentextracellular region
I0005615cellular_componentextracellular space
I0005737cellular_componentcytoplasm
I0005783cellular_componentendoplasmic reticulum
I0016231molecular_functionbeta-N-acetylglucosaminidase activity
I0016798molecular_functionhydrolase activity, acting on glycosyl bonds
I0016998biological_processcell wall macromolecule catabolic process
I0031640biological_processkilling of cells of another organism
I0042742biological_processdefense response to bacterium
I0042802molecular_functionidentical protein binding
I0050829biological_processdefense response to Gram-negative bacterium
I0050830biological_processdefense response to Gram-positive bacterium
I0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
K0003796molecular_functionlysozyme activity
K0005515molecular_functionprotein binding
K0005576cellular_componentextracellular region
K0005615cellular_componentextracellular space
K0005737cellular_componentcytoplasm
K0005783cellular_componentendoplasmic reticulum
K0016231molecular_functionbeta-N-acetylglucosaminidase activity
K0016798molecular_functionhydrolase activity, acting on glycosyl bonds
K0016998biological_processcell wall macromolecule catabolic process
K0031640biological_processkilling of cells of another organism
K0042742biological_processdefense response to bacterium
K0042802molecular_functionidentical protein binding
K0050829biological_processdefense response to Gram-negative bacterium
K0050830biological_processdefense response to Gram-positive bacterium
K0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsACT_SITE:
ChainResidueDetails
AGLU35
IASP52
KGLU35
KASP52
AASP52
CGLU35
CASP52
EGLU35
EASP52
GGLU35
GASP52
IGLU35

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASP101
CASP101
EASP101
GASP101
IASP101
KASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

site_idMCSA2
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
CGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
CASN46
CASP48
CSER50
CASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
CASN59

site_idMCSA3
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
EGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
EASN46
EASP48
ESER50
EASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
EASN59

site_idMCSA4
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
GGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
GASN46
GASP48
GSER50
GASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
GASN59

site_idMCSA5
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
IGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
IASN46
IASP48
ISER50
IASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
IASN59

site_idMCSA6
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
KGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
KASN46
KASP48
KSER50
KASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
KASN59

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PDB entries from 2024-09-18

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