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4JQG

Crystal structure of an inactive mutant of MMP-9 catalytic domain in complex with a fluorogenic synthetic peptidic substrate with a fluorine atom.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AZI P 600
ChainResidue
AALA189
AHIS190
AHIS226
AALA227
AHIS230
AZN301
PLEU3
PGLY4
PPFF5

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 301
ChainResidue
AHIS226
AHIS230
AHIS236
PGLY4
PAZI600

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AHIS175
AASP177
AHIS190
AHIS203

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 303
ChainResidue
AASP182
AGLY183
AASP185
ALEU187
AASP205
AGLU208

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SR A 304
ChainResidue
AASP165
AGLY197
AGLN199
AASP201
AHOH414
AHOH562
AHOH581

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 305
ChainResidue
AASP131
AASP206
AGLU208
APGO312
AHOH577

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 306
ChainResidue
ALYS115
AARG265
ALEU267
AGLY269
BPHE107

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 307
ChainResidue
ALEU114
AGLY233
ALEU234
AASP235
AHOH425

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 308
ChainResidue
ALEU187
AHIS190
AHOH411
PPRO2

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 309
ChainResidue
AALA242
ALEU243
AARG249
AHOH446
AHOH447
AHOH557
PPFF5

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 310
ChainResidue
ALYS115
ATRP116
AHIS117
AHIS118
AEDO311
AHOH438
AHOH589

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 311
ChainResidue
AGLY195
APRO196
AEDO310
AHOH448

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO A 312
ChainResidue
AASP131
AGLY197
AASP207
AGLU208
ALEU209
ACA305
AHOH450
AHOH518
AHOH576

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AZI Q 600
ChainResidue
BALA189
BHIS190
BHIS226
BALA227
BHIS230
BZN301
QLEU3
QGLY4
QPFF5

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 301
ChainResidue
BHIS226
BHIS230
BHIS236
QGLY4
QAZI600

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 302
ChainResidue
BHIS175
BASP177
BHIS190
BHIS203

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 303
ChainResidue
BASP205
BGLU208
BASP182
BGLY183
BASP185
BLEU187

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SR B 304
ChainResidue
BALA164
BASP165
BGLY197
BGLN199
BASP201
BHOH448
BHOH451

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SR B 305
ChainResidue
BASP131
BASP206
BGLU208
BPGO306
BHOH420

site_idCC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO B 306
ChainResidue
BASP131
BLYS184
BASP206
BASP207
BGLU208
BLEU209
BSR305
BHOH500
BHOH574

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
BTYR179
BHIS190
BHOH491
QPRO2

site_idCC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO B 308
ChainResidue
BHIS119

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 309
ChainResidue
APRO255
AHOH432
BPRO255
BHOH402
BHOH464
BHOH593

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 310
ChainResidue
BHOH433
BHOH434
BHOH435
BHOH510
BHOH584

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 311
ChainResidue
BHIS117
BHIS118

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:12051944
ChainResidueDetails
BALA227
AALA227

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944
ChainResidueDetails
AASP185
ALEU187
AGLY197
AGLN199
AASP201
AASP205
AASP206
AGLU208
BASP131
BASP165
BASP182
BGLY183
BASP185
BLEU187
BGLY197
BGLN199
BASP201
BASP205
BASP206
BGLU208
AASP131
AASP165
AASP182
AGLY183

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944, ECO:0000269|PubMed:12077439
ChainResidueDetails
AHIS236
BHIS175
BASP177
BHIS190
BHIS203
BHIS226
BHIS230
BHIS236
AHIS175
AASP177
AHIS190
AHIS203
AHIS226
AHIS230

site_idSWS_FT_FI4
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN120
AASN127
BASN120
BASN127

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PDB entries from 2024-05-15

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