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4H75

Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005819cellular_componentspindle
A0005829cellular_componentcytosol
A0006325biological_processchromatin organization
A0006355biological_processregulation of DNA-templated transcription
A0007049biological_processcell cycle
A0007276biological_processgamete generation
A0009303biological_processrRNA transcription
A0016055biological_processWnt signaling pathway
A0030177biological_processpositive regulation of Wnt signaling pathway
A0031965cellular_componentnuclear membrane
A0035064molecular_functionmethylated histone binding
A0045893biological_processpositive regulation of DNA-templated transcription
A0051321biological_processmeiotic cell cycle
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 301
ChainResidue
APRO68
AVAL69
ASER121
AMET162
AASN163
ATHR164
ATRP165
AGLN180

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 302
ChainResidue
AALA110
AHOH486
ASER109

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 303
ChainResidue
AASP183
AASP184
AGLU187
AHOH481
BARG2

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE NHE A 304
ChainResidue
ATRP62
AGLU64
ATRP72
ALYS73
ATYR91
ALEU100
APHE251
AHOH436
AHOH464
AHOH492
BARG8

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 101
ChainResidue
AGLN59
BTHR6
BALA7
BARG8
BHOH211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Citrulline; alternate => ECO:0000250|UniProtKB:P84243
ChainResidueDetails
BARG2
AGLN180
AASP184

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P68431
ChainResidueDetails
BTHR3
BTHR6

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000250|UniProtKB:P68431
ChainResidueDetails
BM3L4

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: 5-glutamyl serotonin; alternate => ECO:0000250|UniProtKB:P68431
ChainResidueDetails
BGLN5

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Symmetric dimethylarginine => ECO:0000250|UniProtKB:P68433
ChainResidueDetails
BARG8

site_idSWS_FT_FI6
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS28

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS44

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PDB entries from 2024-04-24

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