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4GDL

Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0005737cellular_componentcytoplasm
B0000045biological_processautophagosome assembly
B0000423biological_processmitophagy
B0001974biological_processblood vessel remodeling
B0002376biological_processimmune system process
B0002718biological_processregulation of cytokine production involved in immune response
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005776cellular_componentautophagosome
B0005829cellular_componentcytosol
B0005930cellular_componentaxoneme
B0006325biological_processchromatin organization
B0006914biological_processautophagy
B0006915biological_processapoptotic process
B0006995biological_processcellular response to nitrogen starvation
B0009267biological_processcellular response to starvation
B0009410biological_processresponse to xenobiotic stimulus
B0009620biological_processresponse to fungus
B0010040biological_processresponse to iron(II) ion
B0010659biological_processcardiac muscle cell apoptotic process
B0010667biological_processnegative regulation of cardiac muscle cell apoptotic process
B0016020cellular_componentmembrane
B0016236biological_processmacroautophagy
B0016567biological_processprotein ubiquitination
B0019776molecular_functionAtg8-family ligase activity
B0019883biological_processantigen processing and presentation of endogenous antigen
B0030424cellular_componentaxon
B0030670cellular_componentphagocytic vesicle membrane
B0031397biological_processnegative regulation of protein ubiquitination
B0032480biological_processnegative regulation of type I interferon production
B0032991cellular_componentprotein-containing complex
B0034045cellular_componentphagophore assembly site membrane
B0034274cellular_componentAtg12-Atg5-Atg16 complex
B0034727biological_processpiecemeal microautophagy of the nucleus
B0035973biological_processaggrephagy
B0039689biological_processnegative stranded viral RNA replication
B0042311biological_processvasodilation
B0043066biological_processnegative regulation of apoptotic process
B0043687biological_processpost-translational protein modification
B0044233cellular_componentmitochondria-associated endoplasmic reticulum membrane contact site
B0045060biological_processnegative thymic T cell selection
B0045824biological_processnegative regulation of innate immune response
B0048840biological_processotolith development
B0050687biological_processnegative regulation of defense response to virus
B0050765biological_processnegative regulation of phagocytosis
B0051279biological_processregulation of release of sequestered calcium ion into cytosol
B0051649biological_processestablishment of localization in cell
B0055015biological_processventricular cardiac muscle cell development
B0060047biological_processheart contraction
B0061684biological_processchaperone-mediated autophagy
B0061908cellular_componentphagophore
B0062029biological_processpositive regulation of stress granule assembly
B0070254biological_processmucus secretion
B0070257biological_processpositive regulation of mucus secretion
B0071500biological_processcellular response to nitrosative stress
B1901096biological_processregulation of autophagosome maturation
B1902017biological_processregulation of cilium assembly
B1902617biological_processresponse to fluoride
B1904093biological_processnegative regulation of autophagic cell death
B1904973biological_processpositive regulation of viral translation
B1990234cellular_componenttransferase complex
B2000377biological_processregulation of reactive oxygen species metabolic process
B2000378biological_processnegative regulation of reactive oxygen species metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA B 301
ChainResidue
BALA95
BPRO97
BASN99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
BMET1

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ATG12) => ECO:0000305
ChainResidueDetails
BLYS130

220472

PDB entries from 2024-05-29

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