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4EFE

crystal structure of DNA ligase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003911molecular_functionDNA ligase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
ALEU124
AALA125
AARG141
AARG202
AHOH529
AHOH619
AHOH772
AHOH811
AHOH959

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
AARG129
AARG137
AHOH531
AHOH746
AHOH786
AHOH913

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE NMN A 403
ChainResidue
ATYR25
ATYR29
ATYR30
AVAL37
AASP39
ATYR42
AASP43
AARG158
AHOH505
AHOH560
AHOH652
AHOH701
AHOH721
AHOH724
AHOH785
AHOH876
AHOH948

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 0OV A 404
ChainResidue
ALEU89
AGLU118
ALEU119
ALYS120
AILE121
AGLU175
ATYR227
ALYS291
AHOH523

Functional Information from PROSITE/UniProt
site_idPS01055
Number of Residues30
DetailsDNA_LIGASE_N1 NAD-dependent DNA ligase signature 1. KIDGLAislrYenGvFvrgaTRGDGtvGEN
ChainResidueDetails
ALYS120-ASN149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_01588
ChainResidueDetails
ALYS120

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000269|PubMed:15296738
ChainResidueDetails
ASER88
AGLU118
AARG141
AGLU175
ALYS291
ALYS315
AASP39

219869

PDB entries from 2024-05-15

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