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4DDJ

Crystal structure of saposin A in complex with lauryldimethylamine-N-oxide (LDAO)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005764cellular_componentlysosome
A0006629biological_processlipid metabolic process
A0006665biological_processsphingolipid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE LDA A 101
ChainResidue
ATYR30
ATHR34
ATRP37

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE LDA A 102
ChainResidue
AASP20
ATHR23
AGLU26
ALDA103
ALDA109

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE LDA A 103
ChainResidue
ATYR30
ALDA102
ALDA109
AGLU26

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE LDA A 104
ChainResidue
ALEU76
AASN77
ALDA106
ALDA114
ALDA117

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE LDA A 105
ChainResidue
ATYR54
AALA75
AASN77
ALDA110
ALDA117
ALDA118

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE LDA A 106
ChainResidue
AVAL10
ALDA104
ALDA115
AHOH232

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE LDA A 107
ChainResidue
ATYR30
ALDA108
ALDA109
AHOH252

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE LDA A 108
ChainResidue
ALDA107
ALDA114
ALDA119

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE LDA A 109
ChainResidue
ALDA102
ALDA103
ALDA107
ALDA119

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE LDA A 110
ChainResidue
AALA75
ALDA105

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE LDA A 111
ChainResidue
AGLU65
AGLU71
ALDA112
ALDA113
ALDA116
AHOH253

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE LDA A 112
ChainResidue
ALDA111
ALDA116
ALDA119

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE LDA A 113
ChainResidue
AVAL10
AMET66
ALDA111
ALDA115
ALDA119

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE LDA A 114
ChainResidue
ATRP37
ALDA104
ALDA108
ALDA117

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE LDA A 115
ChainResidue
ALEU38
AMET43
ALDA106
ALDA113
ALDA117
ALDA120
ALDA120

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE LDA A 116
ChainResidue
ALDA111
ALDA112

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE LDA A 117
ChainResidue
ATHR34
ATRP37
ACYS47
AVAL51
ALDA104
ALDA105
ALDA114
ALDA115

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE LDA A 118
ChainResidue
AGLU25
ALEU28
AGLU32
ATYR54
AILE61
ALDA105

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE LDA A 119
ChainResidue
AMET17
ALEU18
ALDA108
ALDA109
ALDA112
ALDA113

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE LDA A 120
ChainResidue
AASP9
ALDA115
ALDA115

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00415, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19167329, ECO:0000269|PubMed:2842863
ChainResidueDetails
AASN21
AASN42

219140

PDB entries from 2024-05-01

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