Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3MDC

DNA polymerase lambda in complex with dFdCTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE GTF A 576
ChainResidue
AHOH52
AGLY426
AASP427
AASP429
ATYR505
APHE506
ATHR507
AGLY508
ASER509
AALA510
AASN513
AHOH54
AMG578
AMG579
AHOH626
AHOH675
PDC6
TDG5
AHOH162
AHOH241
AARG386
AGLY416
ASER417
AARG420
ACYS425

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 11
ChainResidue
ACYS300
AILE302
AILE305
DDC3

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 1
ChainResidue
ASER339
AILE341
AALA344
PDA5
PHOH7
PHOH86

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 577
ChainResidue
AHOH159
ASER463
THOH88

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 578
ChainResidue
AASP427
AASP429
AASP490
AGTF576
AMG579
PDC6

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 579
ChainResidue
AHOH93
AASP427
AASP429
AGTF576
AMG578

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 580
ChainResidue
AHOH20
AHOH172
AHOH234
AASP382
AARG485
AHIS486

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP
ChainResidueDetails
AGLY416-PRO435

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865
ChainResidueDetails
ALYS312

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AARG386
ASER417
AGLY426
AASN513

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AASP427
AASP429
AASP490

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon