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3IDZ

Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8

Replaces:  2ZDF
Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0016180biological_processsnRNA processing
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0016180biological_processsnRNA processing
B0046872molecular_functionmetal ion binding
C0003723molecular_functionRNA binding
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0016180biological_processsnRNA processing
C0046872molecular_functionmetal ion binding
D0003723molecular_functionRNA binding
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0016180biological_processsnRNA processing
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 432
ChainResidue
ASO4451

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 433
ChainResidue
APRO172
AASP173
ASER269
AGLU270

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 434
ChainResidue
AHIS238
AHIS240
AARG241
BARG368

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 435
ChainResidue
ATYR189
AARG227
AGLY340
ATYR341
AGLN378
AGLY379

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 436
ChainResidue
AHIS61
APHE223
AVAL225
AGLU226
AARG227

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 437
ChainResidue
ALYS298
AASN301
AHIS323
ALYS326
AHIS327

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 438
ChainResidue
AARG73
CARG424

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 439
ChainResidue
AGLY318
AGLY319
AHOH459

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 440
ChainResidue
AARG24

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 441
ChainResidue
AARG354

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 442
ChainResidue
APRO243
AARG244
BARG302

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 443
ChainResidue
AMET1
AARG2

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 444
ChainResidue
AARG24
ALEU129
AGLY130

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 445
ChainResidue
AASP250
ASER251
APRO252
AALA311
AGLY312
AGLY319
AARG320
AHOH489

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 446
ChainResidue
AARG25
APHE47
AASP48

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 447
ChainResidue
ALYS99
APRO252
AARG256

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 448
ChainResidue
AARG2
AGLY426
AGLY428

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 449
ChainResidue
APRO366
AARG368

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 450
ChainResidue
ATHR222
APHE223
AALA224
ASER313
AGLY314

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 451
ChainResidue
AARG84
ALEU88
ASO4432
AHOH483
DGLU270

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 452
ChainResidue
APRO304
AARG333

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 453
ChainResidue
AHIS293
AHOH464

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FLC A 454
ChainResidue
AGLY279
ALYS280
AASN281
AARG284
AHOH504
BHIS293

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 455
ChainResidue
AASP63
AHIS64
AASP162
AHIS400
AZN456

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 456
ChainResidue
AHIS59
AHIS61
AHIS141
AASP162
AZN455

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 432
ChainResidue
BARG24

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 433
ChainResidue
BARG84
BARG263
BHOH460

site_idDC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 434
ChainResidue
BLYS210

site_idDC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 435
ChainResidue
BARG354

site_idDC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 436
ChainResidue
BARG368

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 437
ChainResidue
BTYR341
BGLY379
BHIS380
BTYR189
BARG227
BGLY340

site_idDC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 438
ChainResidue
AARG244
BLYS298
BASN301
BHIS323
BLYS326
BHIS327
BLEU361

site_idDC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 439
ChainResidue
BLEU387

site_idDC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 440
ChainResidue
BTHR222
BPHE223
BALA224
BSER313
BGLY314
BHOH493

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 441
ChainResidue
BARG77
DARG244

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 442
ChainResidue
BGLY318
BGLY319
BSO4443
BFLC455

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 443
ChainResidue
BHIS323
BSO4442

site_idEC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 444
ChainResidue
ALYS280
BARG359
BGLY362

site_idEC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 445
ChainResidue
BARG166

site_idEC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 446
ChainResidue
BARG2
BGLY426
BGLY428

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 447
ChainResidue
BARG284
BVAL290

site_idEC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 448
ChainResidue
BLYS99
BPRO252
BARG256

site_idEC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 449
ChainResidue
BLYS217
BASN301
BARG302
BALA303
BPRO304

site_idEC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 450
ChainResidue
BARG24
BLEU129
BGLY130

site_idEC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 451
ChainResidue
BARG25
BPHE47
BASP48

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 452
ChainResidue
BGLU292
BHIS293
BTHR294
BARG320
BFLC455

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 453
ChainResidue
BPRO172
BASP173
BSER269
BGLU270

site_idFC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 454
ChainResidue
BPRO243
BARG244

site_idFC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FLC B 455
ChainResidue
BGLY312
BGLY319
BARG320
BSO4442
BSO4452

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FLC B 456
ChainResidue
ALEU407
ALYS411
BLEU407
BLYS411
BALA414

site_idFC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 457
ChainResidue
BASP63
BHIS64
BASP162
BHIS400
BZN458

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 458
ChainResidue
BHIS59
BHIS61
BHIS141
BASP162
BZN457

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 432
ChainResidue
CARG24
CLYS50

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 433
ChainResidue
CARG25
CPHE47
CASP48

site_idGC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 434
ChainResidue
CARG155

site_idGC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 435
ChainResidue
CPHE223
CALA224
CSER313
CGLY314
CMET315

site_idGC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 436
ChainResidue
CARG25

site_idGC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 438
ChainResidue
CARG2
CPRO430

site_idGC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 439
ChainResidue
CLYS99
CPRO252
CMET253
CARG256

site_idGC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 440
ChainResidue
CLYS298
CASN301
CHIS323
CHIS327

site_idGC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 441
ChainResidue
CARG24
CLEU129
CGLY130

site_idGC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 442
ChainResidue
CARG84
CLEU88
CARG263

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 443
ChainResidue
CTYR189
CARG227
CTYR341
CGLY379
CHIS380

site_idHC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 444
ChainResidue
CARG2
CGLY426
CGLY428

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 445
ChainResidue
CMET1
CARG2

site_idHC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 446
ChainResidue
CPRO172
CASP173
CGLU270

site_idHC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 447
ChainResidue
CASP63
CHIS64
CASP162
CHIS400

site_idHC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 448
ChainResidue
CHIS59
CHIS61
CHIS141
CASP162
CHIS380

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 432
ChainResidue
DTYR189
DARG227
DGLY340
DGLY379

site_idHC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 433
ChainResidue
DARG24

site_idHC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 434
ChainResidue
DARG24
DARG128
DGLY130

site_idHC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 435
ChainResidue
DMET1
DARG2

site_idIC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 436
ChainResidue
DPRO172
DASP173
DSER269
DGLU270

site_idIC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 437
ChainResidue
DARG2
DLYS50
DGLY426
DGLY428

site_idIC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 438
ChainResidue
DASP63
DHIS64
DASP162
DHIS400
DZN439

site_idIC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 439
ChainResidue
DHIS59
DHIS61
DHIS141
DASP162
DZN438

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING:
ChainResidueDetails
AHIS59
AHIS61
BASP162
BHIS400
CHIS59
CHIS61
CASP63
CHIS64
CHIS141
CASP162
CHIS400
DHIS59
DHIS61
DASP63
DHIS64
DHIS141
DASP162
DHIS400
AASP63
AHIS64
AHIS141
AASP162
AHIS400
BHIS59
BHIS61
BASP63
BHIS64
BHIS141

219869

PDB entries from 2024-05-15

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