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2XRZ

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei in complex with intact CPD-lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000719biological_processphotoreactive repair
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006281biological_processDNA repair
A0016829molecular_functionlyase activity
B0000166molecular_functionnucleotide binding
B0000719biological_processphotoreactive repair
B0003677molecular_functionDNA binding
B0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
B0006281biological_processDNA repair
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD A 998
ChainResidue
ATYR252
AILE302
ATRP305
ALYS306
ASER309
ALYS372
AGLY375
AARG378
AMET379
AALA382
AASN403
ALEU264
AASP409
AGLY410
AASN414
AGLY415
ASER422
AHOH2268
AHOH2270
AHOH2296
AHOH2325
AHOH2326
ASER265
CTT7
CHOH2005
AASN266
ALEU267
ASER268
ALEU271
APHE298
AGLU301

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1463
ChainResidue
AILE66
AARG67
AARG215
AALA216
APHE225
AARG405
AHOH2048
AHOH2155
AHOH2156

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1464
ChainResidue
APHE230
AASN266
AGLU366
ATHR370
ALYS372
AHOH2200
AHOH2327
AHOH2328

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1465
ChainResidue
ATYR158
ASER327
ATRP328
AHOH2329
AHOH2330
DDC10
DDC11

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1466
ChainResidue
ASER26
ACYS56
AGLU60
ATRP126
AHOH2332
AHOH2333

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 1467
ChainResidue
AASP320
AHOH2226
BGLU390
BLYS394

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 1468
ChainResidue
ALYS383
ALYS384
AGLU387
ATHR437
AARG441
ATYR442
AMET443

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 1469
ChainResidue
AGLN77
AGLU80
ASER201
AHOH2055

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 1470
ChainResidue
AARG256
AALA297
AASP300
AGLU301
ATRP305
CTT7

site_idBC1
Number of Residues30
DetailsBINDING SITE FOR RESIDUE FAD B 998
ChainResidue
BASN403
BASP409
BGLY410
BASN414
BGLY415
BSER422
BHOH2066
BHOH2211
BHOH2234
BHOH2262
BHOH2263
BHOH2264
ETT7
BTYR252
BLEU264
BSER265
BASN266
BLEU267
BSER268
BLEU271
BPHE298
BGLU301
BILE302
BTRP305
BLYS306
BSER309
BLYS372
BGLY375
BARG378
BALA382

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT B 1463
ChainResidue
BGLN16
BILE43
BALA47
BVAL49
BGLY111
BTHR112
BHOH2265

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT B 1464
ChainResidue
BLYS383
BGLU387
BTHR437
BARG441
BTYR442
BMET443

220472

PDB entries from 2024-05-29

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