Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1VG0

The crystal structures of the REP-1 protein in complex with monoprenylated Rab7 protein

Functional Information from GO Data
ChainGOidnamespacecontents
A0001568biological_processblood vessel development
A0005092molecular_functionGDP-dissociation inhibitor activity
A0005096molecular_functionGTPase activator activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005968cellular_componentRab-protein geranylgeranyltransferase complex
A0006612biological_processprotein targeting to membrane
A0006886biological_processintracellular protein transport
A0007264biological_processsmall GTPase-mediated signal transduction
A0016192biological_processvesicle-mediated transport
A0018344biological_processprotein geranylgeranylation
A0031267molecular_functionsmall GTPase binding
A0044877molecular_functionprotein-containing complex binding
B0000045biological_processautophagosome assembly
B0000421cellular_componentautophagosome membrane
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005764cellular_componentlysosome
B0005765cellular_componentlysosomal membrane
B0005768cellular_componentendosome
B0005770cellular_componentlate endosome
B0005794cellular_componentGolgi apparatus
B0005811cellular_componentlipid droplet
B0005829cellular_componentcytosol
B0006622biological_processprotein targeting to lysosome
B0006914biological_processautophagy
B0007174biological_processepidermal growth factor catabolic process
B0008333biological_processendosome to lysosome transport
B0009617biological_processresponse to bacterium
B0010008cellular_componentendosome membrane
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0016042biological_processlipid catabolic process
B0016787molecular_functionhydrolase activity
B0019003molecular_functionGDP binding
B0019076biological_processviral release from host cell
B0022615biological_processprotein to membrane docking
B0030670cellular_componentphagocytic vesicle membrane
B0030672cellular_componentsynaptic vesicle membrane
B0030904cellular_componentretromer complex
B0031267molecular_functionsmall GTPase binding
B0031902cellular_componentlate endosome membrane
B0031966cellular_componentmitochondrial membrane
B0033162cellular_componentmelanosome membrane
B0034045cellular_componentphagophore assembly site membrane
B0036466biological_processsynaptic vesicle recycling via endosome
B0042147biological_processretrograde transport, endosome to Golgi
B0043195cellular_componentterminal bouton
B0043231cellular_componentintracellular membrane-bounded organelle
B0045022biological_processearly endosome to late endosome transport
B0045335cellular_componentphagocytic vesicle
B0045453biological_processbone resorption
B0045732biological_processpositive regulation of protein catabolic process
B0046907biological_processintracellular transport
B0048524biological_processpositive regulation of viral process
B0051650biological_processestablishment of vesicle localization
B0061724biological_processlipophagy
B0090383biological_processphagosome acidification
B0090385biological_processphagosome-lysosome fusion
B0097208cellular_componentalveolar lamellar body
B0098830cellular_componentpresynaptic endosome
B0099638biological_processendosome to plasma membrane protein transport
B1903542biological_processnegative regulation of exosomal secretion
B1903543biological_processpositive regulation of exosomal secretion
B1905394molecular_functionretromer complex binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 3000
ChainResidue
BTHR22
BGDP1557
BHOH5583
BHOH5584
BHOH5585
BHOH5586

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 3001
ChainResidue
AHOH3026
ATYR234
AASN581
AHOH3012

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GER A 952
ChainResidue
APRO272
ASER274
AARG275
ALEU292
AMET293
AVAL300
APHE333
ALEU362

site_idAC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE GDP B 1557
ChainResidue
BASP16
BSER17
BGLY18
BVAL19
BGLY20
BLYS21
BTHR22
BSER23
BPHE33
BASN125
BLYS126
BASP128
BLEU129
BSER155
BALA156
BLYS157
BMG3000
BHOH5527
BHOH5547
BHOH5570
BHOH5583
BHOH5585
BHOH5586

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PG4 B 5502
ChainResidue
BGLN71
BSER101
BTRP102
BGLU105

Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VIIlGDSGVGKtsL
ChainResidueDetails
BVAL11-LEU24

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING:
ChainResidueDetails
BGLY15
BSER34
BASP63
BASN125
BALA156

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N-acetylthreonine => ECO:0000250|UniProtKB:P51149
ChainResidueDetails
BTHR2

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:22673903
ChainResidueDetails
BSER72

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Cysteine methyl ester => ECO:0000250
ChainResidueDetails
BCYS207

site_idSWS_FT_FI5
Number of Residues2
DetailsLIPID: S-geranylgeranyl cysteine => ECO:0000250
ChainResidueDetails
BCYS205
BCYS207

site_idSWS_FT_FI6
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P51149
ChainResidueDetails
BLYS191
BLYS194

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLN67

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLY18

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon